Tc09v2_t009160.2

Overview
NameTc09v2_t009160.2
Unique NameTc09v2_t009160.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length939
Properties
Property NameValue
NoteAuxin-responsive protein IAA27
Model evidenceSupporting evidence includes similarity to: 14 ESTs, 54 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productauxin-responsive protein IAA27, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588560
GenbankXM_007013044.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g009160Tc09v2_g009160Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p009160.2Tc09v2_p009160.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto440357auto440357Theobroma cacaoexon
exon-auto440358auto440358Theobroma cacaoexon
exon-auto440359auto440359Theobroma cacaoexon
exon-auto440360auto440360Theobroma cacaoexon
exon-auto440361auto440361Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto440362auto440362Theobroma cacaoCDS
CDS-auto440363auto440363Theobroma cacaoCDS
CDS-auto440364auto440364Theobroma cacaoCDS
CDS-auto440365auto440365Theobroma cacaoCDS
CDS-auto440366auto440366Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t009160.2 ID=Tc09v2_t009160.2|Name=Tc09v2_t009160.2|organism=Theobroma cacao|type=mRNA|length=939bp
ATGTCTAAGCCAATAGAGCACGATTACATAGGCTTGTCAGAGCAGCAGCT
TCCTTCAATGGAGAAAAGCTCTGATGCTGGTAATAAAAAGAATGGTTTAC
ACTTAAAAGCTACTGAGTTGAGACTCGGGTTACCTGGCTCCGAGTCACCA
GAGAGGGAGGATCATGACCATAAACTGCTTTCACTGAAGAGTTTTGTGTC
AGGGGCGAAAAGGGGTTTTTCTGATACACTCAACGGTGGCGGGAAATGGG
TTTTTGGTGGTGGGAATGGAGGTGGATCTGAAGGCTTGTTTTCTCCTAGA
AGTGGCAGTAGTAATGGAGGAAACGGTCTTTCCGGGTCGGATTCGGGTGT
GGGCGGTCCTGTTTTGAAGGATGAAGCCGCTCAGAAGCCCGTGGTGGGTC
AGGAGAAGAAGCCTCAGGTTGCCGGTGGTAGTGGCCATGGGAATGGGAAT
ATTGCTCCTGTTTCAAAGGCACAAGTGGTTGGATGGCCACCAATTCGCTC
TTTCCGGAAGAATACAATGGCTTCTCATCCTCCGAAGAATGATGATGATG
CAGAAGCCAAGTTGGGATCAGGATGTCTGTATGTCAAAGTTAGTATGGAT
GGTGCTCCATATCTGAGGAAAGTTGATCTCAAATTCTACGGCAGCTATAA
AGAACTCTCCTCAGCACTTGAAAAGATGTTCAGCTGCTTTACAATTGGTC
AGTGTGGTTCTCATGGAGTTCCTAGCCGAGATGGGTTGAGTGAGAGTCGA
TTAATTGATCTTCTGCATGGCTCCGAGTATGTACTCACATATGAAGATAA
AGATGGTGACTGGATGCTCGTCGGTGATGTTCCCTGGGAGATGTTTACCG
ACTCTTGTAAGAGGTTGAGGATCATGAAGAGTTCAGAGGCCATCGGCCTA
GCCCCAAGGGCGATGGAGAAGTGCAAGAATCGTACCTAG
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protein sequence of Tc09v2_p009160.2

>Tc09v2_p009160.2 ID=Tc09v2_p009160.2|Name=Tc09v2_p009160.2|organism=Theobroma cacao|type=polypeptide|length=313bp
MSKPIEHDYIGLSEQQLPSMEKSSDAGNKKNGLHLKATELRLGLPGSESP
EREDHDHKLLSLKSFVSGAKRGFSDTLNGGGKWVFGGGNGGGSEGLFSPR
SGSSNGGNGLSGSDSGVGGPVLKDEAAQKPVVGQEKKPQVAGGSGHGNGN
IAPVSKAQVVGWPPIRSFRKNTMASHPPKNDDDAEAKLGSGCLYVKVSMD
GAPYLRKVDLKFYGSYKELSSALEKMFSCFTIGQCGSHGVPSRDGLSESR
LIDLLHGSEYVLTYEDKDGDWMLVGDVPWEMFTDSCKRLRIMKSSEAIGL
APRAMEKCKNRT*
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