Tc09v2_t008770.1

Overview
NameTc09v2_t008770.1
Unique NameTc09v2_t008770.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1182
Properties
Property NameValue
NotePutative Protein phosphatase 2C 56
Model evidenceSupporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productprotein phosphatase 2C 56
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588523
GenbankXM_007012985.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g008770Tc09v2_g008770Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p008770.1Tc09v2_p008770.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto439497auto439497Theobroma cacaoexon
exon-auto439498auto439498Theobroma cacaoexon
exon-auto439499auto439499Theobroma cacaoexon
exon-auto439500auto439500Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto439501auto439501Theobroma cacaoCDS
CDS-auto439502auto439502Theobroma cacaoCDS
CDS-auto439503auto439503Theobroma cacaoCDS
CDS-auto439504auto439504Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t008770.1 ID=Tc09v2_t008770.1|Name=Tc09v2_t008770.1|organism=Theobroma cacao|type=mRNA|length=1182bp
ATGGAACCTCTACTCGAAGAACATGAGGAACAACGATTCAAGCGAGTCGG
CTCGCTCCGTGAACCGGACCTGGATTCAACCAGCTCAAGCCTATCCTCGA
TACTCAGTGCGGAGGATTCTCGAAGCACGACGAGTTCCGGCGATATTTCG
GGCACTAGCGGGAGTTCCGGTGAGATTTTAACGGCGGAGGCCGTGGTTCC
GAGGTTGCTCGAACCTGCTCCTGCATGCGAGGAATTGACGGTGACGGTAG
CGGCGAAGCAGAAGTGTGTTGGGAGGAATAATAAGGGAGTGACGTGGGGG
TTCACTTCAGTGATAGGGAGACGGAGAGAGATGGAAGACGCTATCGCCGT
TATACCAGAGTTCATGTCCCGCACGTGCGACCACTTGGGAGGTTGTACGG
CTCCTGGTTCTAAAACCTCCTCTGAAATCTCCCCTATCCATTTCTTCGGC
GTCTATGATGGCCATGGTGGCTCCCAGGTGGCTAAATTTTGTGCCGAGAG
GATGCATGGAGTGATAGCAGAGGAATGGGACCATGAAATGGTTGAGAGCT
CTGGGTGGCAGAGGAGATGGGAAGTAGCATTTTCCAGTAGTTTCGAGAGG
GCTGACGATGAAGTCCGGACTGCAGCAGTTGCACCAGAAATGGTGGGATC
AACTGCTGTTGTTGTAGTTTTATCTGGTTGCCAGATTATTACATCCAATT
GTGGTGATTCGAGGGCAGTGCTTTGCCGAGGAACTGAAACAATTCCATTA
ACTGTTGATCAGAAGCCTGATAGACAGGACGAACTCATGAGAATTGAAAG
AGAGGGAGGGAGAGTCATAAACTGGAATGGTGCTAGGGTCTTTGGAGTTC
TTGCAATGTCCAGAGCTATAGGTGATCGCTATTTAAGGCCATGGATAATT
CCAGTACCTGAGGTTACCTTCATGACCAGGACCGATGAGGATGAGTGTTT
GATATTGGCCAGTGATGGGTTGTGGGATGTCATGACAAATGAAGAGGCTG
GGGAGGTTGCTCGCCGCCTACTAAGACGGCGGCGCAGGTCTTTGATGGCT
GATGGAATTTCTCCGGCTCAAGCAGTAGCTGATAATTTGACCGAAATAGC
AATTGGACGAAACAGTTCAGATAATATTTCCATCATCGTTGTGGATTTAA
AACCCAAGAGGAAACGCCAGCCAAGGCAGTGA
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protein sequence of Tc09v2_p008770.1

>Tc09v2_p008770.1 ID=Tc09v2_p008770.1|Name=Tc09v2_p008770.1|organism=Theobroma cacao|type=polypeptide|length=394bp
MEPLLEEHEEQRFKRVGSLREPDLDSTSSSLSSILSAEDSRSTTSSGDIS
GTSGSSGEILTAEAVVPRLLEPAPACEELTVTVAAKQKCVGRNNKGVTWG
FTSVIGRRREMEDAIAVIPEFMSRTCDHLGGCTAPGSKTSSEISPIHFFG
VYDGHGGSQVAKFCAERMHGVIAEEWDHEMVESSGWQRRWEVAFSSSFER
ADDEVRTAAVAPEMVGSTAVVVVLSGCQIITSNCGDSRAVLCRGTETIPL
TVDQKPDRQDELMRIEREGGRVINWNGARVFGVLAMSRAIGDRYLRPWII
PVPEVTFMTRTDEDECLILASDGLWDVMTNEEAGEVARRLLRRRRRSLMA
DGISPAQAVADNLTEIAIGRNSSDNISIIVVDLKPKRKRQPRQ*
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