Tc09v2_t005090.4

Overview
NameTc09v2_t005090.4
Unique NameTc09v2_t005090.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1677
Properties
Property NameValue
NoteProtein phosphatase 2C 16
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 65 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 8 samples with support for all annotated introns
Productprobable protein phosphatase 2C 53, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588102
GenbankXM_007012290.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g005090Tc09v2_g005090Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p005090.4Tc09v2_p005090.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto430860auto430860Theobroma cacaoexon
exon-auto430861auto430861Theobroma cacaoexon
exon-auto430862auto430862Theobroma cacaoexon
exon-auto430863auto430863Theobroma cacaoexon
exon-auto430864auto430864Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto430865auto430865Theobroma cacaoCDS
CDS-auto430866auto430866Theobroma cacaoCDS
CDS-auto430867auto430867Theobroma cacaoCDS
CDS-auto430868auto430868Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t005090.4 ID=Tc09v2_t005090.4|Name=Tc09v2_t005090.4|organism=Theobroma cacao|type=mRNA|length=1677bp
ATGGAGGAGATGTCTCCGACGGTCGCGGTGCCATTTAGATTAGGTAATTC
AGTCTGTGAAAACGCTACCTTTGCTACCCGTATGGACATCACAAGACTTA
AGCTTATGGCAAATCCTGCTGGTATATTAACTGATTCTGCGACCGAGGCT
ACTAACCAGCCAGTAACTGGTGAAGATGTGGATTGTAACTGTGCTGCTAT
GGGGACGGAAGAAAGTAGTATAGAGGTGACACTGCCGGAAGAGGTCAAGG
GAGAAGAAGCTACCTCTTTGGATATGTTATCTGATAGTAAAGTTAGTTGG
ATTGCTAGTAATGATGTTATAGCCCAAGAAAGTGAGGAGGAGGAGGATTC
TTTCTCCTTGGAAGGTGATCATGTTCTTGATCTTGATAGCTCTTGTTCAC
TATCAGTGGCAAGTGAGACTAGTAGCCTTTATGGAGAGGATTTTTTGGGT
TTCGATGTTACTTCTGAGGTAGGAACACCAAGTTCTGTGGACATTGAGAA
AAGTATTTGCAGTGTAGATTTTATTGCAAAGGCCACCAAGTTTGTGGAGT
CAAACGTTGAAACAGAGGTTGCAAGTGAACCCCTCGCTGTTGCAGTAAGC
CTTGAGGAAGAGATTGGAGATGGGTCTGAACAAAAGCCATCTGCAGTGGT
ACTTCAATTGGCTGTTGAAAAGGAGCTGAGTACAACAGTTCCAGTTCCAC
GCAGTGTATTTGAGGTGGAATATGTGCCTCTTTGGGGATTTACCTCTATT
TGTGGAAGGAGACCTGAGATGGAAGATGCAGTTGCTGCTGTCCCTCGGTT
TTTAAAGGTTCCCATTCAGATGCTAATTGGTGATCGGGTACTTGATGGCA
CGAGCAGGGGCTTCGCTCATCAGACTGCTCACTTCTTTGGGGTCTATGAT
GGTCATGGAGGCTCCCAGGTTGCAAACTACTGTCGTGAGCGTATTCACTC
TGCATTGGCTGAGGAAATAGAGTTTGTTAAGGAATGCTGGACTAATGAAA
GCATAACAGACAGTTGCCAAGAGCTGTGGAAAAAGGCATTCACAAATTGT
TTTGTTAAAGTTGATGCTGAGGTTGGAGGACAAGCTAGTCAAGAACCAGT
TGCCCCAGAAACAGTTGGTTCTACTGCCGTTGTTGCCCTTATTTGTTCTT
CTCACATTGTTGTAGCAAACTGTGGAGATTCAAGAGCTGTTCTATGTCGT
GGGAAAGAGCCCATGGCTTTGTCGGTGGATCATAAACCCAATCGAGAAGA
TGAATATGAAAGGATTGAAGCAGCTGGAGGCAAGGTTATTCAATGGAATG
GGCATCGAGTTTTTGGCGTTCTTGCAATGTCAAGGTCCATTGGTGATAGA
TATTTGAAGCCATGGATCATTCCAGAGCCAGAAGTGATGTTTGTTCCAAG
AGCAAAAGAAGATGAATGCCTCATTTTAGCCAGTGATGGTCTATGGGATG
TTATGACAAATGAAGAAGCATGTGACCTGGCTAGGAGACGAATACTTCAG
TGGCACAAAAAGAACGGTGCTACACTGACTTCAGAAAGGGGTGATACAAT
TGATCCTGCTGCTCAAGCTGCAGCAGAATACCTCTCAAACCGCGCTCTGC
AAAAAGGAAGCAAGGATAACATCACTGTAACTGTGGTGGATCTGAAAGCT
CAAAGGAAGTTCAAGAGTAAGACATGA
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protein sequence of Tc09v2_p005090.4

>Tc09v2_p005090.4 ID=Tc09v2_p005090.4|Name=Tc09v2_p005090.4|organism=Theobroma cacao|type=polypeptide|length=559bp
MEEMSPTVAVPFRLGNSVCENATFATRMDITRLKLMANPAGILTDSATEA
TNQPVTGEDVDCNCAAMGTEESSIEVTLPEEVKGEEATSLDMLSDSKVSW
IASNDVIAQESEEEEDSFSLEGDHVLDLDSSCSLSVASETSSLYGEDFLG
FDVTSEVGTPSSVDIEKSICSVDFIAKATKFVESNVETEVASEPLAVAVS
LEEEIGDGSEQKPSAVVLQLAVEKELSTTVPVPRSVFEVEYVPLWGFTSI
CGRRPEMEDAVAAVPRFLKVPIQMLIGDRVLDGTSRGFAHQTAHFFGVYD
GHGGSQVANYCRERIHSALAEEIEFVKECWTNESITDSCQELWKKAFTNC
FVKVDAEVGGQASQEPVAPETVGSTAVVALICSSHIVVANCGDSRAVLCR
GKEPMALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDR
YLKPWIIPEPEVMFVPRAKEDECLILASDGLWDVMTNEEACDLARRRILQ
WHKKNGATLTSERGDTIDPAAQAAAEYLSNRALQKGSKDNITVTVVDLKA
QRKFKSKT*
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