Tc09v2_t005090.1

Overview
NameTc09v2_t005090.1
Unique NameTc09v2_t005090.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1677
Properties
Property NameValue
NoteProtein phosphatase 2C 16
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 65 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productprobable protein phosphatase 2C 53, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18588102
GenbankXM_007012289.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g005090Tc09v2_g005090Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p005090.1Tc09v2_p005090.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto430823auto430823Theobroma cacaoexon
exon-auto430824auto430824Theobroma cacaoexon
exon-auto430825auto430825Theobroma cacaoexon
exon-auto430826auto430826Theobroma cacaoexon
exon-auto430827auto430827Theobroma cacaoexon
exon-auto430828auto430828Theobroma cacaoexon
exon-auto430829auto430829Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto430830auto430830Theobroma cacaoCDS
CDS-auto430831auto430831Theobroma cacaoCDS
CDS-auto430832auto430832Theobroma cacaoCDS
CDS-auto430833auto430833Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t005090.1 ID=Tc09v2_t005090.1|Name=Tc09v2_t005090.1|organism=Theobroma cacao|type=mRNA|length=1677bp
ATGGAGGAGATGTCTCCGACGGTCGCGGTGCCATTTAGATTAGGTAATTC
AGTCTGTGAAAACGCTACCTTTGCTACCCGTATGGACATCACAAGACTTA
AGCTTATGGCAAATCCTGCTGGTATATTAACTGATTCTGCGACCGAGGCT
ACTAACCAGCCAGTAACTGGTGAAGATGTGGATTGTAACTGTGCTGCTAT
GGGGACGGAAGAAAGTAGTATAGAGGTGACACTGCCGGAAGAGGTCAAGG
GAGAAGAAGCTACCTCTTTGGATATGTTATCTGATAGTAAAGTTAGTTGG
ATTGCTAGTAATGATGTTATAGCCCAAGAAAGTGAGGAGGAGGAGGATTC
TTTCTCCTTGGAAGGTGATCATGTTCTTGATCTTGATAGCTCTTGTTCAC
TATCAGTGGCAAGTGAGACTAGTAGCCTTTATGGAGAGGATTTTTTGGGT
TTCGATGTTACTTCTGAGGTAGGAACACCAAGTTCTGTGGACATTGAGAA
AAGTATTTGCAGTGTAGATTTTATTGCAAAGGCCACCAAGTTTGTGGAGT
CAAACGTTGAAACAGAGGTTGCAAGTGAACCCCTCGCTGTTGCAGTAAGC
CTTGAGGAAGAGATTGGAGATGGGTCTGAACAAAAGCCATCTGCAGTGGT
ACTTCAATTGGCTGTTGAAAAGGAGCTGAGTACAACAGTTCCAGTTCCAC
GCAGTGTATTTGAGGTGGAATATGTGCCTCTTTGGGGATTTACCTCTATT
TGTGGAAGGAGACCTGAGATGGAAGATGCAGTTGCTGCTGTCCCTCGGTT
TTTAAAGGTTCCCATTCAGATGCTAATTGGTGATCGGGTACTTGATGGCA
CGAGCAGGGGCTTCGCTCATCAGACTGCTCACTTCTTTGGGGTCTATGAT
GGTCATGGAGGCTCCCAGGTTGCAAACTACTGTCGTGAGCGTATTCACTC
TGCATTGGCTGAGGAAATAGAGTTTGTTAAGGAATGCTGGACTAATGAAA
GCATAACAGACAGTTGCCAAGAGCTGTGGAAAAAGGCATTCACAAATTGT
TTTGTTAAAGTTGATGCTGAGGTTGGAGGACAAGCTAGTCAAGAACCAGT
TGCCCCAGAAACAGTTGGTTCTACTGCCGTTGTTGCCCTTATTTGTTCTT
CTCACATTGTTGTAGCAAACTGTGGAGATTCAAGAGCTGTTCTATGTCGT
GGGAAAGAGCCCATGGCTTTGTCGGTGGATCATAAACCCAATCGAGAAGA
TGAATATGAAAGGATTGAAGCAGCTGGAGGCAAGGTTATTCAATGGAATG
GGCATCGAGTTTTTGGCGTTCTTGCAATGTCAAGGTCCATTGGTGATAGA
TATTTGAAGCCATGGATCATTCCAGAGCCAGAAGTGATGTTTGTTCCAAG
AGCAAAAGAAGATGAATGCCTCATTTTAGCCAGTGATGGTCTATGGGATG
TTATGACAAATGAAGAAGCATGTGACCTGGCTAGGAGACGAATACTTCAG
TGGCACAAAAAGAACGGTGCTACACTGACTTCAGAAAGGGGTGATACAAT
TGATCCTGCTGCTCAAGCTGCAGCAGAATACCTCTCAAACCGCGCTCTGC
AAAAAGGAAGCAAGGATAACATCACTGTAACTGTGGTGGATCTGAAAGCT
CAAAGGAAGTTCAAGAGTAAGACATGA
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protein sequence of Tc09v2_p005090.1

>Tc09v2_p005090.1 ID=Tc09v2_p005090.1|Name=Tc09v2_p005090.1|organism=Theobroma cacao|type=polypeptide|length=559bp
MEEMSPTVAVPFRLGNSVCENATFATRMDITRLKLMANPAGILTDSATEA
TNQPVTGEDVDCNCAAMGTEESSIEVTLPEEVKGEEATSLDMLSDSKVSW
IASNDVIAQESEEEEDSFSLEGDHVLDLDSSCSLSVASETSSLYGEDFLG
FDVTSEVGTPSSVDIEKSICSVDFIAKATKFVESNVETEVASEPLAVAVS
LEEEIGDGSEQKPSAVVLQLAVEKELSTTVPVPRSVFEVEYVPLWGFTSI
CGRRPEMEDAVAAVPRFLKVPIQMLIGDRVLDGTSRGFAHQTAHFFGVYD
GHGGSQVANYCRERIHSALAEEIEFVKECWTNESITDSCQELWKKAFTNC
FVKVDAEVGGQASQEPVAPETVGSTAVVALICSSHIVVANCGDSRAVLCR
GKEPMALSVDHKPNREDEYERIEAAGGKVIQWNGHRVFGVLAMSRSIGDR
YLKPWIIPEPEVMFVPRAKEDECLILASDGLWDVMTNEEACDLARRRILQ
WHKKNGATLTSERGDTIDPAAQAAAEYLSNRALQKGSKDNITVTVVDLKA
QRKFKSKT*
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