Tc09v2_t002200.1

Overview
NameTc09v2_t002200.1
Unique NameTc09v2_t002200.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1950
Properties
Property NameValue
NoteEIN3-binding F-box protein 1
Model evidenceSupporting evidence includes similarity to: 49 ESTs, 32 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 25 samples with support for all annotated introns
ProductEIN3-binding F-box protein 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587794
GenbankXM_018127234.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g002200Tc09v2_g002200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p002200.1Tc09v2_p002200.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto424222auto424222Theobroma cacaoexon
exon-auto424223auto424223Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto424224auto424224Theobroma cacaoCDS
CDS-auto424225auto424225Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t002200.1 ID=Tc09v2_t002200.1|Name=Tc09v2_t002200.1|organism=Theobroma cacao|type=mRNA|length=1950bp
ATGTCAAAGCTCTTTTCTTTCAGTGGAAGTGATGATTTTTGCCCTGGGGG
CTCAATTTACCCAAACCCCAAGGAGTCGAGCCACTTTTTGTCCCTTGGAC
ATCATGTGGATGTGTATTTTCCTCTTCGCAAAAAGTCCCGCATCAGTGCC
CCATTTGTGTTCTCTGGAGAGAGGTTTGAGCAGAAGAAGCCATCAATCGA
TGTTCTCCCTGATGAATGCTTATTTGAAATCTTCAGACGGTTGCCTGGAG
GCCAAGAGAGGAGTGCCTGTGCTTGTGTTTCCAAGCGCTGGCTTACACTT
GTAAGTAACATCCGCAAAGATGAAATCACCACCCAAGCTTTGAATCTCAA
GGATGAGAGTACTGATAAGAAGGGTGGAGTTGTTTCTGAGGATGAAGATC
AGGATGTTGAGGGTGATGGATACCTCTCTAGGAGCTTGGAAGGGAAGAAA
GCGACAGATGTTAGACTTGCTGCTATTGCTGTCGGAACTGCTAGTCGTGG
AGGATTGGGCAAGCTTTTCATTCGAGGAAGCAATTCCAGTCGTGGAGTGA
CAGCTGTTGGTCTCAGGGCCATTTCCCGTGGATGCCCTTCTCTTAGGGTT
CTTTCCTTGTGGAGTTTGTCTTCTGTTGGAGATGAAGGTCTGTGTCAGAT
TGCTGATGGGTGTCACCAGCTAGAGAAGCTTGACCTTTGCCACTGTCCTG
CAATTACTGATAAGTCTTTGATTGCTGTTGCAAAGAGCTGCCCAAATTTG
ACTGATCTGACCATAGAGGGTTGTGCAAACATTGAAAATGAAGGTCTCCA
AGCTGTAGCATCCTGCTGTCCCAATCTAAAGTCTGTTTCAATCAAAGACT
GCCCCCTTGTTGGAGATCAAGGAATTGCAAGCCTGTTGTCGTCGGCCTCA
TATTCCCTCACAAAAGTAAAGCTCCATGCTTTGAAGATTACCGATGTCTC
TCTTGCTGTTATTGGACACTATGGCAATGCAGTGACTGACCTTTCTCTTA
TTAGCCTTCCAAATGTGAGTGAGAAGGGCTTCTGGGTGATGGGTAATGGG
CATGGGCTACAGAAATTGAAGTCTTTCACAGTTACATCTTGCCGTGGAGT
GACAGATTTGGGACTTGAAGCTGTTGGAAAGGGTTGCCCAAATTTGAAGC
AGTTCTGCCTCAGCAAATGTGCTTTCTTATCTGATAATGGATTGGTGTCT
TTTGCCAAAGCAGCTGGTTCACTAGAGAGCTTGCAACTGGAGGAGTGCCA
CAGGATCACCCAATTTGGGTTTTTTGGTTCCCTTCTTAACTGTGGTGCAA
AGTTGAAGGCTATTTCTTTCGTGAACTGCTTGGGCATTAAGGACCTAAAC
TTGGGATTGCCTTCCCTATCCCCTTGTGAATCCCTCCGATCACTGTCCAT
CCGTGACTGCCCTGGTTTTGGTGATTCTAGCTTGGCTACATTGGGTAAGT
TGTGCCCTCAACTGCAGAATGTGGAGTTGAGCGGGCTTCATGGAATAACA
GATGCTGGGATTCTTCCATTGCTTGAGAGTTGTGAGGCTGGTTTGGTGAA
GGTTAATCTCAGTGGTTGTGTGAATTTGAGTGACAAAGCTGTTTGTGTCA
TGGCTGATTTGCACGGGTGGACTCTAGAAAAGATAAATCTTGATGGTTGT
AAGATCAGTGATGGTAGTGTGGTTGCAATTGCAGAGAACTGCCAGTTGCT
CAGTGATCTTGATGTCTCAAAGTGTTCCATCACTGATTCTGGAATTGCAG
CTCTTGCTCGTTCTAATCAGATCAATCTGCAGATTCTTTCTGTGTCTGGT
TGCACAATGGTCTCAGACAAAAGCTTGCCTTCTCTTGGAAAATTGGGTCA
GACTCTCTTGGGATTAAACCTGCAGCAATGCAAGGCAATCAGCAGCAGTG
CAGTTGATCTGCTTGTGGAGCAGCTATGGAGGTGTGATATCCTTTTCTGA
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protein sequence of Tc09v2_p002200.1

>Tc09v2_p002200.1 ID=Tc09v2_p002200.1|Name=Tc09v2_p002200.1|organism=Theobroma cacao|type=polypeptide|length=650bp
MSKLFSFSGSDDFCPGGSIYPNPKESSHFLSLGHHVDVYFPLRKKSRISA
PFVFSGERFEQKKPSIDVLPDECLFEIFRRLPGGQERSACACVSKRWLTL
VSNIRKDEITTQALNLKDESTDKKGGVVSEDEDQDVEGDGYLSRSLEGKK
ATDVRLAAIAVGTASRGGLGKLFIRGSNSSRGVTAVGLRAISRGCPSLRV
LSLWSLSSVGDEGLCQIADGCHQLEKLDLCHCPAITDKSLIAVAKSCPNL
TDLTIEGCANIENEGLQAVASCCPNLKSVSIKDCPLVGDQGIASLLSSAS
YSLTKVKLHALKITDVSLAVIGHYGNAVTDLSLISLPNVSEKGFWVMGNG
HGLQKLKSFTVTSCRGVTDLGLEAVGKGCPNLKQFCLSKCAFLSDNGLVS
FAKAAGSLESLQLEECHRITQFGFFGSLLNCGAKLKAISFVNCLGIKDLN
LGLPSLSPCESLRSLSIRDCPGFGDSSLATLGKLCPQLQNVELSGLHGIT
DAGILPLLESCEAGLVKVNLSGCVNLSDKAVCVMADLHGWTLEKINLDGC
KISDGSVVAIAENCQLLSDLDVSKCSITDSGIAALARSNQINLQILSVSG
CTMVSDKSLPSLGKLGQTLLGLNLQQCKAISSSAVDLLVEQLWRCDILF*
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