Tc09v2_t001410.4

Overview
NameTc09v2_t001410.4
Unique NameTc09v2_t001410.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length837
Properties
Property NameValue
NoteChorismate mutase 2
Model evidenceSupporting evidence includes similarity to: 18 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productchorismate mutase 2, transcript variant X1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587708
GenbankXM_018128386.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g001410Tc09v2_g001410Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p001410.4Tc09v2_p001410.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto422206auto422206Theobroma cacaoexon
exon-auto422207auto422207Theobroma cacaoexon
exon-auto422208auto422208Theobroma cacaoexon
exon-auto422209auto422209Theobroma cacaoexon
exon-auto422210auto422210Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto422211auto422211Theobroma cacaoCDS
CDS-auto422212auto422212Theobroma cacaoCDS
CDS-auto422213auto422213Theobroma cacaoCDS
CDS-auto422214auto422214Theobroma cacaoCDS
CDS-auto422215auto422215Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t001410.4 ID=Tc09v2_t001410.4|Name=Tc09v2_t001410.4|organism=Theobroma cacao|type=mRNA|length=837bp
ATGTCTCTGGTAATGCTGCTAATTCTTGTCTGTTTGACATCTTCAGCTTG
TAAACACGAAATGGCGAAAGCAGAGTCCAATGTTAGCGATGGGTTGACGC
TAGAATTGATAAGAGAGTCATTAATCAGGCAAGAAGACACCATTGTTTTC
AGTCTCATAGAGAGAGCTAGGTTCCCTTTAAATTCTCCAACCTACGACAA
ATCTTACGCTTCTTCTGTTCCTGGGTCCTGCGGCTCTCTGGTTGAGTTCA
TTGTGAAAGAAACAGAGGCCATCCAAGCCAAGGCTGGGAGATATGAGAAT
CCTGAGGAACATCCATTCTTCCCAGATAATCTACCACCCTTACAGGTGCC
ACCTCACAAGTATCCTGAGGTTTTGCATCCTGCAGCCATGTCTGTTAACA
TAAATAAGATCATATGGGATATGTATTTCAATGAACTGCTTCCATTGTTT
GTCACCCCGGGTGATGATGGAAACTATGCATCAACAGCTACTCGTGATCT
TGAGTGTTTACAGGCCCTCTCCAGGAGAATACATTATGGAAAACTTGTAG
CTGAAGTTAAATTCAGAGATGAAAGGAAAGACTATGAGCCAGCAATTCGT
GCTCAGGATAGAGATACCCTGATCAATTTGCTGACCTTTGCTCGAGTGGA
AGAAGCAGTGAAGAAGAGGGTAGAGAAGAAGGCAATGACATTTGGCCAGG
AAGTGAAGCTCGGTGATGAGGGCAACAAGGGGAAGTACAAAGTAAATCCA
GCCATTGTTTCCCGGCTCTATGGAGATTGGGTGATTCCCCTGACAAAGGA
TGTTGAAGTTGAGTACCTCCTCCATCGCCTTGACTGA
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protein sequence of Tc09v2_p001410.4

>Tc09v2_p001410.4 ID=Tc09v2_p001410.4|Name=Tc09v2_p001410.4|organism=Theobroma cacao|type=polypeptide|length=279bp
MSLVMLLILVCLTSSACKHEMAKAESNVSDGLTLELIRESLIRQEDTIVF
SLIERARFPLNSPTYDKSYASSVPGSCGSLVEFIVKETEAIQAKAGRYEN
PEEHPFFPDNLPPLQVPPHKYPEVLHPAAMSVNINKIIWDMYFNELLPLF
VTPGDDGNYASTATRDLECLQALSRRIHYGKLVAEVKFRDERKDYEPAIR
AQDRDTLINLLTFARVEEAVKKRVEKKAMTFGQEVKLGDEGNKGKYKVNP
AIVSRLYGDWVIPLTKDVEVEYLLHRLD*
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