Tc09v2_t001410.2

Overview
NameTc09v2_t001410.2
Unique NameTc09v2_t001410.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length777
Properties
Property NameValue
NoteChorismate mutase 2
Model evidenceSupporting evidence includes similarity to: 1 EST, 14 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productchorismate mutase 2, transcript variant X2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18587708
GenbankXM_007011658.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc09v2_g001410Tc09v2_g001410Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc09v2_p001410.2Tc09v2_p001410.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto422179auto422179Theobroma cacaoexon
exon-auto422180auto422180Theobroma cacaoexon
exon-auto422181auto422181Theobroma cacaoexon
exon-auto422182auto422182Theobroma cacaoexon
exon-auto422183auto422183Theobroma cacaoexon
exon-auto422184auto422184Theobroma cacaoexon
exon-auto422185auto422185Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto422186auto422186Theobroma cacaoCDS
CDS-auto422187auto422187Theobroma cacaoCDS
CDS-auto422188auto422188Theobroma cacaoCDS
CDS-auto422189auto422189Theobroma cacaoCDS
CDS-auto422190auto422190Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc09v2_t001410.2 ID=Tc09v2_t001410.2|Name=Tc09v2_t001410.2|organism=Theobroma cacao|type=mRNA|length=777bp
ATGGCGAAAGCAGAGTCCAATGTTAGCGATGGGTTGACGCTAGAATTGAT
AAGAGAGTCATTAATCAGGCAAGAAGACACCATTGTTTTCAGTCTCATAG
AGAGAGCTAGGTTCCCTTTAAATTCTCCAACCTACGACAAATCTTACGCT
TCTTCTGTTCCTGGGTCCTGCGGCTCTCTGGTTGAGTTCATTGTGAAAGA
AACAGAGGCCATCCAAGCCAAGGCTGGGAGATATGAGAATCCTGAGGAAC
ATCCATTCTTCCCAGATAATCTACCACCCTTACAGGTGCCACCTCACAAG
TATCCTGAGGTTTTGCATCCTGCAGCCATGTCTGTTAACATAAATAAGAT
CATATGGGATATGTATTTCAATGAACTGCTTCCATTGTTTGTCACCCCGG
GTGATGATGGAAACTATGCATCAACAGCTACTCGTGATCTTGAGTGTTTA
CAGGCCCTCTCCAGGAGAATACATTATGGAAAACTTGTAGCTGAAGTTAA
ATTCAGAGATGAAAGGAAAGACTATGAGCCAGCAATTCGTGCTCAGGATA
GAGATACCCTGATCAATTTGCTGACCTTTGCTCGAGTGGAAGAAGCAGTG
AAGAAGAGGGTAGAGAAGAAGGCAATGACATTTGGCCAGGAAGTGAAGCT
CGGTGATGAGGGCAACAAGGGGAAGTACAAAGTAAATCCAGCCATTGTTT
CCCGGCTCTATGGAGATTGGGTGATTCCCCTGACAAAGGATGTTGAAGTT
GAGTACCTCCTCCATCGCCTTGACTGA
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protein sequence of Tc09v2_p001410.2

>Tc09v2_p001410.2 ID=Tc09v2_p001410.2|Name=Tc09v2_p001410.2|organism=Theobroma cacao|type=polypeptide|length=259bp
MAKAESNVSDGLTLELIRESLIRQEDTIVFSLIERARFPLNSPTYDKSYA
SSVPGSCGSLVEFIVKETEAIQAKAGRYENPEEHPFFPDNLPPLQVPPHK
YPEVLHPAAMSVNINKIIWDMYFNELLPLFVTPGDDGNYASTATRDLECL
QALSRRIHYGKLVAEVKFRDERKDYEPAIRAQDRDTLINLLTFARVEEAV
KKRVEKKAMTFGQEVKLGDEGNKGKYKVNPAIVSRLYGDWVIPLTKDVEV
EYLLHRLD*
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