Tc08v2_t011190.1

Overview
NameTc08v2_t011190.1
Unique NameTc08v2_t011190.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length5355
Properties
Property NameValue
NoteProtein translocase subunit SECA2, chloroplastic
Model evidenceSupporting evidence includes similarity to: 1 EST, 11 Proteins, and 99% coverage of the annotated genomic feature by RNAseq alignments
Productprotein translocase subunit SECA2, chloroplastic, transcript variant X4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592408
GenbankXM_018125769.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g011190Tc08v2_g011190Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p011190.1Tc08v2_p011190.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto407850auto407850Theobroma cacaoexon
exon-auto407851auto407851Theobroma cacaoexon
exon-auto407852auto407852Theobroma cacaoexon
exon-auto407853auto407853Theobroma cacaoexon
exon-auto407854auto407854Theobroma cacaoexon
exon-auto407855auto407855Theobroma cacaoexon
exon-auto407856auto407856Theobroma cacaoexon
exon-auto407857auto407857Theobroma cacaoexon
exon-auto407858auto407858Theobroma cacaoexon
exon-auto407859auto407859Theobroma cacaoexon
exon-auto407860auto407860Theobroma cacaoexon
exon-auto407861auto407861Theobroma cacaoexon
exon-auto407862auto407862Theobroma cacaoexon
exon-auto407863auto407863Theobroma cacaoexon
exon-auto407864auto407864Theobroma cacaoexon
exon-auto407865auto407865Theobroma cacaoexon
exon-auto407866auto407866Theobroma cacaoexon
exon-auto407867auto407867Theobroma cacaoexon
exon-auto407868auto407868Theobroma cacaoexon
exon-auto407869auto407869Theobroma cacaoexon
exon-auto407870auto407870Theobroma cacaoexon
exon-auto407871auto407871Theobroma cacaoexon
exon-auto407872auto407872Theobroma cacaoexon
exon-auto407873auto407873Theobroma cacaoexon
exon-auto407874auto407874Theobroma cacaoexon
exon-auto407875auto407875Theobroma cacaoexon
exon-auto407876auto407876Theobroma cacaoexon
exon-auto407877auto407877Theobroma cacaoexon
exon-auto407878auto407878Theobroma cacaoexon
exon-auto407879auto407879Theobroma cacaoexon
exon-auto407880auto407880Theobroma cacaoexon
exon-auto407881auto407881Theobroma cacaoexon
exon-auto407882auto407882Theobroma cacaoexon
exon-auto407883auto407883Theobroma cacaoexon
exon-auto407884auto407884Theobroma cacaoexon
exon-auto407885auto407885Theobroma cacaoexon
exon-auto407886auto407886Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto407887auto407887Theobroma cacaoCDS
CDS-auto407888auto407888Theobroma cacaoCDS
CDS-auto407889auto407889Theobroma cacaoCDS
CDS-auto407890auto407890Theobroma cacaoCDS
CDS-auto407891auto407891Theobroma cacaoCDS
CDS-auto407892auto407892Theobroma cacaoCDS
CDS-auto407893auto407893Theobroma cacaoCDS
CDS-auto407894auto407894Theobroma cacaoCDS
CDS-auto407895auto407895Theobroma cacaoCDS
CDS-auto407896auto407896Theobroma cacaoCDS
CDS-auto407897auto407897Theobroma cacaoCDS
CDS-auto407898auto407898Theobroma cacaoCDS
CDS-auto407899auto407899Theobroma cacaoCDS
CDS-auto407900auto407900Theobroma cacaoCDS
CDS-auto407901auto407901Theobroma cacaoCDS
CDS-auto407902auto407902Theobroma cacaoCDS
CDS-auto407903auto407903Theobroma cacaoCDS
CDS-auto407904auto407904Theobroma cacaoCDS
CDS-auto407905auto407905Theobroma cacaoCDS
CDS-auto407906auto407906Theobroma cacaoCDS
CDS-auto407907auto407907Theobroma cacaoCDS
CDS-auto407908auto407908Theobroma cacaoCDS
CDS-auto407909auto407909Theobroma cacaoCDS
CDS-auto407910auto407910Theobroma cacaoCDS
CDS-auto407911auto407911Theobroma cacaoCDS
CDS-auto407912auto407912Theobroma cacaoCDS
CDS-auto407913auto407913Theobroma cacaoCDS
CDS-auto407914auto407914Theobroma cacaoCDS
CDS-auto407915auto407915Theobroma cacaoCDS
CDS-auto407916auto407916Theobroma cacaoCDS
CDS-auto407917auto407917Theobroma cacaoCDS
CDS-auto407918auto407918Theobroma cacaoCDS
CDS-auto407919auto407919Theobroma cacaoCDS
CDS-auto407920auto407920Theobroma cacaoCDS
CDS-auto407921auto407921Theobroma cacaoCDS
CDS-auto407922auto407922Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t011190.1 ID=Tc08v2_t011190.1|Name=Tc08v2_t011190.1|organism=Theobroma cacao|type=mRNA|length=5355bp
ATGGAGTCGCAGGAGTTACCGGAGTGTCCGGTGTGCTTGCAACCGTACGA
CGGCGTGTGTGCGATCCCACGGGTGCTCGCGTGTGGCCACACGGTGTGCG
AAACCTGCCTTGTAAACCTCCCCCAGAAGCTCCCGGGAGCAATCCGCTGC
CCCGCGTGTACTGTGCTCGTCAAGTACCCTCCAGAGGGCCCCTCGACTCT
TCCCAAGAACATCGAACTCCTCAGACTCATCCCCGGGTCTGGAAGTACCC
GAAAACACGTCAACAAATCCCCACATGACTCCCGTGTCCCTTTCCTCCCT
CGCTCTTGGTCAGACGAGTTTTACTCCAATTGGAAAATCTACATTCTCCC
TAGTGACGCTGTTGAGAGACAAAAAGTAAGTCTTTTGGCCGTTGGGTCTT
TTTCAACTGGGGGTGAGGGTGGTTCTGGGTTTACGGCTGGCTATTTTGTT
AGAGTTATGGATTGTTTGAGTGGAATGAAGGAGGGGGAAAGAGAGGAGTT
GGGTTTAGTTTTAAGTGCCTTTAATAAACAAAGTAGTAGAATTTGTAGGG
TTTTGGGTTTATGGGGTGATCCTGGAGATGGGATTTTGTATATAGTGAGT
GAGAAGCAAGAATATGGGAACTTTTTGGATAAAAACTTGGGTGCTTTTGA
AAAGGATGGGTTTTTTAATTTTGCAATGATAGGTATGGAAATATGTGAGG
CAGTTATTGCTTTACATAAAGAAGGGTTAATTGCTGGTTGTTTAGGTTTT
TCTTGCTTTCAGTTTGATGATTTTGGGCACGTATGTCTGAATTTGAGTGA
GGTGTTATTGATTGGAAGGGAAGTTCTTGAAGTTGTTGCAAAGGTGGGTT
CTAGTGGGAAAAAGATTGGTGATGGAGAAATTGTTTTGTTGATAACAGAT
TTGTTTAAAAGGGATGTGTTTGTTAGCCCTGAGGTGTTGCTTGAGCTGTC
GGAGAAAGAGGGTATTGTGGTAGAGCGTGGTAGCTCAAGATATTCAATAA
GGTATAGCTCGGATGTCTGGCTGTTAGGTTGTATTTTTCTTAGGATTCTC
GTTGGGGAAGTTTTTAGTGATGAGTTGGTTGATTACATGTGTCATATTAT
TGTGAAAGGAAGTGAAAATAATGAATTGGATTGTTCAAGTGCTTACATGA
GTTTGATGGAGAAAGTGAGCTCTTTGTTGGGAACTAAATTTGGTTCAGAA
CATGTGTCATTGCAACAGATTCTTTGTAAATGTTTGGAGTTTAATCCAAA
AAATCGTTCACTTGTGACAGATGTGTGGAAATATATTAGGGAGCTGGTTA
TTAAACCTCAGTTTGATAAAATGGTCAAATTGGATGGAGCAAGTTATGAT
GAGAATAGAGGTCGATGCTTAGTTGTTGGAAAATTGTTTCTGTTGTCCAG
GGAAAGAATTGAAATACAGGAAAAAGATGTGTCACAAGGAATGGAAACAA
ATGGTGCAGCAAATATGGTTATTGGTCTCACAGAGGGAAGCATTAAATCT
AAAGATTTGCAAGGCCATCTTGATTGTGTTACAGGATTAGCTGTTGCAGG
TGGTTATCTGTTCAGCTCCTCCTTTGATAAATCAGTCAAAGTATGGTCTC
TGCAGGACTACTCTCATTTGCATACATTTAGAGGCCATGAGCATAAGGTC
ATGGCTGTTGTCTGTGTGGATGAAGAACAGCCATTATGCATTAGTGGTGA
TAGTGGTGGTGGTATATTTGTATGGAGCATTAGCATCCCTTTTGCACAAG
AGCCATTGAAAAAATGGTATGAAGAAAAGGATTGGCGTTACAGTGGAATT
CATGCTTTGGCAGTTTCAGAGATTGGATATTTATATACTGGAAGTGGAGA
TAAATTGATTAAAGAATGGTCATTGCGGGATGGCACCTTTTCATGCTCTA
TGAGTGGCCATAAATCTGTAGTTTCCACGCTAGCAGTGAGTAATGGAGTT
CTTTACAGTGGGAGTTGGGATGGAACTGTTCGATTATGGAGTCTAAGTGA
TCACAGTCTTTTGACAGTTTTAGGGGAAGACACATTGGGATCTGTGACCA
CTGTCTTGTCTCTTGCAGCTGACATGAATACGCTTGTTGCTGCTTATGAA
AATGGATCTGTTAAGATCTGGAGGGATGATGTATTTAGGAAATCTATACA
AATACACAATGGTGCCATTTTTACTATTAGCTTGGAGGGGAAGTGGCTTT
TTACAGGAAGTTGGGACAAGACCATCAAGGCACAGGAGTTAGCAGGAGAT
GATTTTCAGGTGGACGTTAGACCTATTGGATCAATTCCTTGTGATTCTGT
CATAACAGCTTTATCTTTCTGGGAAGGGAAGCTTTTTGTAGGTTTTGGTG
ATAGGACTGTCAAGGAGGACGTGGGTCGTTTTAAGAAGACTTTGGGTGAT
TTTATTAGCTTAAACTACTGGGTTGTTCGAGATTATTATCGTCTTGTCGA
CTTTGTTAATGCACTCGAGCCAGAGATTCAGAGGCTATCTGATGAGCAGC
TGACTGCTAAAACTTCTGAGTTTAAGAAAAGGTTGAGTCAAGGGGATAAT
ATTTCCGATATTCAAGCTGAGGCATTTGCTGTTGTTCGGGAAGCTGCAAG
AAGGAAGCTTGGCATGCGCCATTTTGATGTGCAGATTATTGGTGGAGCGG
TACTTCATGATGGGTCCATTGCTGAGATGAAAACAGGGGAGGGAAAAACA
TTGGTTTCCACATTAGCTGCATATCTTAATGCACTGACTGGTGATGGTGT
CCATGTTGTAACTGTGAATGATTACCTTGCTCAACGTGATGCTGAGTGGA
TGGGTCGAGTTCATCGCTTCTTAGGTCTTTCAGTTGGGCTTATTCAGAAG
GGGATGACAGCTGAAGAGAGGAGAATCAACTACCAATGTGATATAACATA
CACCAACAACTCAGAACTAGGCTTTGATTATCTTCGGGATAATCTTGCTG
GAAATAGTGATCAACTTGTGATGAGATGGCCAAAACCATTTCATTTTGCA
ATTGTTGATGAAGTTGATTCTGTTCTCATTGATGAAGGAAGAAATCCTTT
GTTAATAAGTGGTGAGGCTAGTAAAGATGCTGCACGTTATCCGGTTGCTG
CTAAAGTGGCTGAGCTGCTAACGAGGGGTCTGCATTATAATGTTGAGCTT
AAAGATAATTCAGTGGAGTTGACTGAAGAAGGAATTGCACTTGCTGAGTT
GGCTCTTGAAACGAATGATCTGTGGGATGAAAATGATCCCTGGGCAAGAT
TTGTGATGAATGCTTTGAAAGCTAAAGAATTTTATCGGCGAGATGTCCAA
TACATTGTCAGAAATGGGAAAGCTCTCATTATCAATGAGCTGACAGGCAG
AGTTGAGGAGAAACGGAGATGGTCTGAAGGGATTCACCAGGCTGTAGAAG
CAAAAGAAGGTCTGAAGATTCAGGCTGATTCAGTTGTTGTGGCTCAAATC
ACCTACCAATCACTATTTAAGCTCTATCCAAAGCTTTCAGGGATGACTGG
GACTGCAAAAACTGAAGAGAGGGAGTTCTTGAAAATGTTCCAGATGCCCG
TTATTGAAGTGCCCACTAATCTTCCAAATATTCGTAAAGATTTACCCATA
CAAGCTTTTGCTACTGCTCGAGGGAAATGGGAGTATGTTAGTCAAGAAGT
GGAATACATGTTTAGGCAGGGCCGTCCAGTTTTAGTTGGGACCACTAGTG
TTGAGAACTCTGAGTATCTGTCCGATCTGCTGAAGGAGAGAAATATCCCT
CACAATGTCCTGAATGCGAGACCCAAGTATGCAGCAAGGGAAGCGGAAAT
TATTGCCCAAGCAGGCAGAAAGTATGCTATAACTATTTCTACCAATATGG
CTGGCAGAGGAACTGACATTATTCTTGGGGGTAATCCAAAAATGCTTGCA
AGAGAAATTATAGAGGACAGCTTGCTTTCATTTCTGACAAGAGAAGCTCC
TAATCTTGAAGCCGATGACATGGGAATTTCAAAAAAGGTGTTGTCCAAGA
TAAAGGTTGGACCATCATCAATGGCTTTGTTAGCTAAGGCTGCCTTAATG
GCAAAATATGTTGGCAAAAGTGAGGGAAAGAGCTGGACATATCAGGAGGC
AAAATCTATCATTTCAGAGTCTGTGGAAATGAGCCAGTCAATGCCTTTGA
AAGAGCTGAGGAAGCTTATTGATGAACAGTCTGAGATGTACCCTCTTGGC
CCTTCTATAGCAATTACTTATTTGTCTGTTCTCAAAGATTGTGAAGTACA
CTGCACCAAAGAAGGGTTTGAAGTGAAAAGGCTTGGGGGGCTTCATGTGA
TCGGCACATCTTTGCATGAATCCCGTAGAATAGATAATCAGCTTCGTGGT
AGAGCAGGAAGGCAAGGGGATCCTGGATCCACACGGTTTATGGTGAGCTT
GCAAGATGAGATGTTTCAAAAGTTTAATTTTGATACTGAGTGGGCTGTGA
AGCTTATTTCAAAAATTACAAATGATGAAGATATACCTATTGAAGGTGAT
GCAATTGTAAAGCAGCTTTTGGCGCTTCAAATCAATGCAGAGAAGTACTT
CTTTAACATAAGAAAGAGCCTGGTCGAGTTCGATGAAGTTTTAGAGGTTC
AAAGAAAGCATGTCTATGACCTCAGGCAATTGATTTTGACGGGTGATAAT
GAAAGTTGTTCTCAACATATTTTTCAGTACATGCAAGCAGTGGTAGATGA
AATTGTCTTTGGAAATGCTGATCCACTGCAGCATCCAAGATACTGGAGTT
TGGCTAAGCTTTTGAAAGAGTTCATTGCTATTGCAGGGAAGCTACTGGAC
GACTCATTTGCATCAATTACAGAGGAAGATTTACTCCAATCTCTTAAACA
GCTACATGAATCAAATTCTGTAGATATTGACAATCTTCACCTTCCAAACT
TGCCTAAGCCTCCAGATTGCTTTAGAGGAATCCGCAGAAAAATTTCTTCA
TTGAAGCGCTGGCTTGCTATTTGCTCTGATGATTCAACAAAGAATGGAAG
GTACCGGCCAACAACTAATATTCTCCGCAAATACCTTGGGGATATTTTGA
TTGCTTCATATTTGAACATCGTAGAAGAATCTGGTTATGATGATGCTTAC
ATAAAAGAAATTGAGAGAGCAGTTCTTGTCAAGACTCTGGATTGTTTCTG
GAGGGATCATCTTGTAAACATGAACAGGCTGAGTTCTGCGGTAAATGTAA
GAAGTTTTGGGCACAGAAATCCTCTTGAAGAATATAAAATTGATGGGTGT
CGATTTTTTATCTCAATGCTCAGTGCAACGCGAAGGTTAACTGTAGAATC
ACTCTTGCATTATTGGTCATCCCCTATGGAGTCACAAGAGCTATTTTTAT
CATAA
back to top

protein sequence of Tc08v2_p011190.1

>Tc08v2_p011190.1 ID=Tc08v2_p011190.1|Name=Tc08v2_p011190.1|organism=Theobroma cacao|type=polypeptide|length=1785bp
MESQELPECPVCLQPYDGVCAIPRVLACGHTVCETCLVNLPQKLPGAIRC
PACTVLVKYPPEGPSTLPKNIELLRLIPGSGSTRKHVNKSPHDSRVPFLP
RSWSDEFYSNWKIYILPSDAVERQKVSLLAVGSFSTGGEGGSGFTAGYFV
RVMDCLSGMKEGEREELGLVLSAFNKQSSRICRVLGLWGDPGDGILYIVS
EKQEYGNFLDKNLGAFEKDGFFNFAMIGMEICEAVIALHKEGLIAGCLGF
SCFQFDDFGHVCLNLSEVLLIGREVLEVVAKVGSSGKKIGDGEIVLLITD
LFKRDVFVSPEVLLELSEKEGIVVERGSSRYSIRYSSDVWLLGCIFLRIL
VGEVFSDELVDYMCHIIVKGSENNELDCSSAYMSLMEKVSSLLGTKFGSE
HVSLQQILCKCLEFNPKNRSLVTDVWKYIRELVIKPQFDKMVKLDGASYD
ENRGRCLVVGKLFLLSRERIEIQEKDVSQGMETNGAANMVIGLTEGSIKS
KDLQGHLDCVTGLAVAGGYLFSSSFDKSVKVWSLQDYSHLHTFRGHEHKV
MAVVCVDEEQPLCISGDSGGGIFVWSISIPFAQEPLKKWYEEKDWRYSGI
HALAVSEIGYLYTGSGDKLIKEWSLRDGTFSCSMSGHKSVVSTLAVSNGV
LYSGSWDGTVRLWSLSDHSLLTVLGEDTLGSVTTVLSLAADMNTLVAAYE
NGSVKIWRDDVFRKSIQIHNGAIFTISLEGKWLFTGSWDKTIKAQELAGD
DFQVDVRPIGSIPCDSVITALSFWEGKLFVGFGDRTVKEDVGRFKKTLGD
FISLNYWVVRDYYRLVDFVNALEPEIQRLSDEQLTAKTSEFKKRLSQGDN
ISDIQAEAFAVVREAARRKLGMRHFDVQIIGGAVLHDGSIAEMKTGEGKT
LVSTLAAYLNALTGDGVHVVTVNDYLAQRDAEWMGRVHRFLGLSVGLIQK
GMTAEERRINYQCDITYTNNSELGFDYLRDNLAGNSDQLVMRWPKPFHFA
IVDEVDSVLIDEGRNPLLISGEASKDAARYPVAAKVAELLTRGLHYNVEL
KDNSVELTEEGIALAELALETNDLWDENDPWARFVMNALKAKEFYRRDVQ
YIVRNGKALIINELTGRVEEKRRWSEGIHQAVEAKEGLKIQADSVVVAQI
TYQSLFKLYPKLSGMTGTAKTEEREFLKMFQMPVIEVPTNLPNIRKDLPI
QAFATARGKWEYVSQEVEYMFRQGRPVLVGTTSVENSEYLSDLLKERNIP
HNVLNARPKYAAREAEIIAQAGRKYAITISTNMAGRGTDIILGGNPKMLA
REIIEDSLLSFLTREAPNLEADDMGISKKVLSKIKVGPSSMALLAKAALM
AKYVGKSEGKSWTYQEAKSIISESVEMSQSMPLKELRKLIDEQSEMYPLG
PSIAITYLSVLKDCEVHCTKEGFEVKRLGGLHVIGTSLHESRRIDNQLRG
RAGRQGDPGSTRFMVSLQDEMFQKFNFDTEWAVKLISKITNDEDIPIEGD
AIVKQLLALQINAEKYFFNIRKSLVEFDEVLEVQRKHVYDLRQLILTGDN
ESCSQHIFQYMQAVVDEIVFGNADPLQHPRYWSLAKLLKEFIAIAGKLLD
DSFASITEEDLLQSLKQLHESNSVDIDNLHLPNLPKPPDCFRGIRRKISS
LKRWLAICSDDSTKNGRYRPTTNILRKYLGDILIASYLNIVEESGYDDAY
IKEIERAVLVKTLDCFWRDHLVNMNRLSSAVNVRSFGHRNPLEEYKIDGC
RFFISMLSATRRLTVESLLHYWSSPMESQELFLS*
back to top