Tc08v2_t009990.2

Overview
NameTc08v2_t009990.2
Unique NameTc08v2_t009990.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1128
Properties
Property NameValue
NoteBiotin--protein ligase 1, chloroplastic
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 17 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productbiotin--protein ligase 2, transcript variant X3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18592271
GenbankXM_007018903.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g009990Tc08v2_g009990Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p009990.2Tc08v2_p009990.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto405107auto405107Theobroma cacaoexon
exon-auto405108auto405108Theobroma cacaoexon
exon-auto405109auto405109Theobroma cacaoexon
exon-auto405110auto405110Theobroma cacaoexon
exon-auto405111auto405111Theobroma cacaoexon
exon-auto405112auto405112Theobroma cacaoexon
exon-auto405113auto405113Theobroma cacaoexon
exon-auto405114auto405114Theobroma cacaoexon
exon-auto405115auto405115Theobroma cacaoexon
exon-auto405116auto405116Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto405117auto405117Theobroma cacaoCDS
CDS-auto405118auto405118Theobroma cacaoCDS
CDS-auto405119auto405119Theobroma cacaoCDS
CDS-auto405120auto405120Theobroma cacaoCDS
CDS-auto405121auto405121Theobroma cacaoCDS
CDS-auto405122auto405122Theobroma cacaoCDS
CDS-auto405123auto405123Theobroma cacaoCDS
CDS-auto405124auto405124Theobroma cacaoCDS
CDS-auto405125auto405125Theobroma cacaoCDS
CDS-auto405126auto405126Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t009990.2 ID=Tc08v2_t009990.2|Name=Tc08v2_t009990.2|organism=Theobroma cacao|type=mRNA|length=1128bp
ATGTGGCTTTGCCAAAGCATTTTTTGCATGTTGGTAAGCAGCCGTTTCCG
TTTACTTTCTCCCCATATTTCTTTCTCATTCCTCTCCCTGAAAAATCACA
CCCCGTCAAGGCTTTCTTTCTCCGTCGCAGCCTCAGCCATGGAGACGAGC
TCGCCTTCTGCTCTATTTCTATGCGGCAAATCATCTGCCGAAACCGAAAT
TGCAAAGTCATTAAAAATCAACAACGCTCTTAAGCTTCCAAACGGCGGCG
AAGTTTCAACTCATTTACAATCAGAGATTAGCAATTTCCAATTGGGTGAA
GAGGCTTTTAATGTCAATTTGTTTCTGAATTCACTCTCGACTAACCGATT
CGGTCGGAATCTTATTTGGTCCCCGCGGTTGCCTTCCACGCACGACGTAG
TTTCTCACAATTTTTGTGAGCTTCCAATTGGTGCAGCTTGTGTAGCTGAT
GTTCAGTTTAAAGGGCGAGGTCGGTCCAAGAATGCGTGGGAGTCTCCGAG
GGGATGCCTTATGTTTTCATTTACTTTAGAAATGGAGGATGGAAAAATTG
TGCCTTTGGTACAATATGTAGTGTCTCTAGCTCTGACGGAGGCTATAAAG
GATATTTGCGATCGGGAAGGCTTCCCATGTCTTGATGTTAGAATCAAGTG
GCCAAATGATCTGTACTTAAATGGCCTTAAAGTTGGAGGCATTCTCTGCA
CATCAACATATAAATCAAAGAAGTTCAATGTCAGTTCTGGTGTAGGTTTG
AATGTTGATAATGAGAAACCAACGACATGCTTGAATGCAGTATTAAAAGA
GCTGTCTACTACTTCTAACAAATTTAGAAGAGAAGATATCATGGCTGCCT
TCTTTAATAAATTTGAGATGTTATATGATATTTTCTTAAATCAAGGATTT
CAAACTCTAGAGGAGCTTTACTATAGAACATGGCTTCATAGTGGGCAGAG
AGTTATTGTGCAGGAAAAGAATGAGGATAGAATTGTGGAAAATGTGGTCA
CGATCCAGGGTTTGACATCCTCAGGGTATTTGTTAGCTATTGGTGATGAC
TATCAAATGTGTGAACTTCATCCTGATGGAAACAGTTTTGACTTCTTCAA
AGGACTGGTCAGGAGAAAACTTGAATGA
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protein sequence of Tc08v2_p009990.2

>Tc08v2_p009990.2 ID=Tc08v2_p009990.2|Name=Tc08v2_p009990.2|organism=Theobroma cacao|type=polypeptide|length=376bp
MWLCQSIFCMLVSSRFRLLSPHISFSFLSLKNHTPSRLSFSVAASAMETS
SPSALFLCGKSSAETEIAKSLKINNALKLPNGGEVSTHLQSEISNFQLGE
EAFNVNLFLNSLSTNRFGRNLIWSPRLPSTHDVVSHNFCELPIGAACVAD
VQFKGRGRSKNAWESPRGCLMFSFTLEMEDGKIVPLVQYVVSLALTEAIK
DICDREGFPCLDVRIKWPNDLYLNGLKVGGILCTSTYKSKKFNVSSGVGL
NVDNEKPTTCLNAVLKELSTTSNKFRREDIMAAFFNKFEMLYDIFLNQGF
QTLEELYYRTWLHSGQRVIVQEKNEDRIVENVVTIQGLTSSGYLLAIGDD
YQMCELHPDGNSFDFFKGLVRRKLE*
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