Tc08v2_t003820.1

Overview
NameTc08v2_t003820.1
Unique NameTc08v2_t003820.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1179
Properties
Property NameValue
NoteFerredoxin--NADP reductase, leaf isozyme, chloroplastic
Model evidenceSupporting evidence includes similarity to: 19 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments, including 10 samples with support for all annotated introns
CommentThe sequence of the model RefSeq transcript was modified relative to this genomic sequence to represent the inferred CDS: deleted 1 base in 1 codon
Productferredoxin--NADP reductase, leaf isozyme, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591567
GenbankXM_007017755.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g003820Tc08v2_g003820Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p003820.1Tc08v2_p003820.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto389980auto389980Theobroma cacaoexon
exon-auto389981auto389981Theobroma cacaoexon
exon-auto389982auto389982Theobroma cacaoexon
exon-auto389983auto389983Theobroma cacaoexon
exon-auto389984auto389984Theobroma cacaoexon
exon-auto389985auto389985Theobroma cacaoexon
exon-auto389986auto389986Theobroma cacaoexon
exon-auto389987auto389987Theobroma cacaoexon
exon-auto389988auto389988Theobroma cacaoexon
exon-auto389989auto389989Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto389990auto389990Theobroma cacaoCDS
CDS-auto389991auto389991Theobroma cacaoCDS
CDS-auto389992auto389992Theobroma cacaoCDS
CDS-auto389993auto389993Theobroma cacaoCDS
CDS-auto389994auto389994Theobroma cacaoCDS
CDS-auto389995auto389995Theobroma cacaoCDS
CDS-auto389996auto389996Theobroma cacaoCDS
CDS-auto389997auto389997Theobroma cacaoCDS
CDS-auto389998auto389998Theobroma cacaoCDS
CDS-auto389999auto389999Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t003820.1 ID=Tc08v2_t003820.1|Name=Tc08v2_t003820.1|organism=Theobroma cacao|type=mRNA|length=1179bp
ATGGCACTGACCGTCAATGCTGCTGTATCTCTCCCATCTTCCAAGTCATC
TTCTCTTTCATTTAAAAGCTCTATCACTATATCTGAAAGAATGAACTTCA
ACAAGAGTGTATGGTACTCCAGGAATGTCAGCGCTGGTGGAAATGTGGTT
TCCATTAAAGCTCAGGTCACTACGGAGGCTCCTGCAAAAGTAGTGAAAGT
TTCCAAGAAAGATGACGAAGGTGTTGTTGTTAACAAGTTCAAGCCAAAGA
ATCCTTACATTGGAAAGTGCCTTCTCAACACCAAAATTACTGGAGATGAT
GCTCCTGGAGAGACTTGGCACATGGTTTTTAGCACTGAAGGGGAAGTGCC
TTACAGAGAAGGACAATCCATTGGTGTCACTCCTGAGGGTATTGACAAGA
ACGGAAAACCCCACAAACTTAGACTGTACTCCATCGCCAGTAGTGCTTTG
GGAGACTTCGGCACTTCTCAAACTGTTTCCTTGTGTGTCAAAAGGCTTGT
TTACACCAATGAACAAGGAGAGATAGTGAAAGGAGTTTGCTCAAATTTCC
TGTGTGACTTGAAGCCTGGTGCTGATGGGACGATCACTGGACCTGTTGGG
AAAGAGATGCTTATGCCAAAAGATCCAAATGCCACCATCATAAGGCTTGC
AACTGGAACTGGAATTGCTCCTTTCCGTTCATTCTTATGGAAGATGTTCT
TTGAGAAGCATGATGACTACAAGTTTAATGGGTTGGCTTGGCTCTTCTTG
GGTGTACCCACAAGTAGCTCACTGCTCTACAAGGACAAATTTGAGAAGAT
GAAGGAGAAGGCACCAGATAACTTCAGGGTGGATTACGTCGAGAGTAGAG
AACAAACAAATGACAAGGGTGAGAAGATGTATATTCAAACCCGGATGGCC
CAGTATGCTGAAGAGCTATGGGAATTGCTCAAGAAAGATAACACCTATGT
CTACATGTGCGGGCTCGAGGGTATGGAGAAGGGAATTGATGAAATCATGA
CTTCTTTGGCTGCCAAAAATGGTATTGATTGGCTTGAATACAAGAGACAA
TTAAAGAAAGCAGAACAATGGAACGTTGAGGTCTACCGATCTTGGCTGCA
TTGTATTTCTACAGGGGATTTTGCCATTCTGTCAACACTTCCTCTACTCC
TGCACTACTTCGCACCATATATTTTTTAA
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protein sequence of Tc08v2_p003820.1

>Tc08v2_p003820.1 ID=Tc08v2_p003820.1|Name=Tc08v2_p003820.1|organism=Theobroma cacao|type=polypeptide|length=393bp
MALTVNAAVSLPSSKSSSLSFKSSITISERMNFNKSVWYSRNVSAGGNVV
SIKAQVTTEAPAKVVKVSKKDDEGVVVNKFKPKNPYIGKCLLNTKITGDD
APGETWHMVFSTEGEVPYREGQSIGVTPEGIDKNGKPHKLRLYSIASSAL
GDFGTSQTVSLCVKRLVYTNEQGEIVKGVCSNFLCDLKPGADGTITGPVG
KEMLMPKDPNATIIRLATGTGIAPFRSFLWKMFFEKHDDYKFNGLAWLFL
GVPTSSSLLYKDKFEKMKEKAPDNFRVDYVESREQTNDKGEKMYIQTRMA
QYAEELWELLKKDNTYVYMCGLEGMEKGIDEIMTSLAAKNGIDWLEYKRQ
LKKAEQWNVEVYRSWLHCISTGDFAILSTLPLLLHYFAPYIF*
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