Tc08v2_t003520.2

Overview
NameTc08v2_t003520.2
Unique NameTc08v2_t003520.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length3324
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 11 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 16 samples with support for all annotated introns
Product5'-3' exoribonuclease 3, transcript variant X2
Note5'-3' exoribonuclease 3
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591532
GenbankXM_007017709.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g003520Tc08v2_g003520Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p003520.2Tc08v2_p003520.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto389415auto389415Theobroma cacaoexon
exon-auto389416auto389416Theobroma cacaoexon
exon-auto389417auto389417Theobroma cacaoexon
exon-auto389418auto389418Theobroma cacaoexon
exon-auto389419auto389419Theobroma cacaoexon
exon-auto389420auto389420Theobroma cacaoexon
exon-auto389421auto389421Theobroma cacaoexon
exon-auto389422auto389422Theobroma cacaoexon
exon-auto389423auto389423Theobroma cacaoexon
exon-auto389424auto389424Theobroma cacaoexon
exon-auto389425auto389425Theobroma cacaoexon
exon-auto389426auto389426Theobroma cacaoexon
exon-auto389427auto389427Theobroma cacaoexon
exon-auto389428auto389428Theobroma cacaoexon
exon-auto389429auto389429Theobroma cacaoexon
exon-auto389430auto389430Theobroma cacaoexon
exon-auto389431auto389431Theobroma cacaoexon
exon-auto389432auto389432Theobroma cacaoexon
exon-auto389433auto389433Theobroma cacaoexon
exon-auto389434auto389434Theobroma cacaoexon
exon-auto389435auto389435Theobroma cacaoexon
exon-auto389436auto389436Theobroma cacaoexon
exon-auto389437auto389437Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto389438auto389438Theobroma cacaoCDS
CDS-auto389439auto389439Theobroma cacaoCDS
CDS-auto389440auto389440Theobroma cacaoCDS
CDS-auto389441auto389441Theobroma cacaoCDS
CDS-auto389442auto389442Theobroma cacaoCDS
CDS-auto389443auto389443Theobroma cacaoCDS
CDS-auto389444auto389444Theobroma cacaoCDS
CDS-auto389445auto389445Theobroma cacaoCDS
CDS-auto389446auto389446Theobroma cacaoCDS
CDS-auto389447auto389447Theobroma cacaoCDS
CDS-auto389448auto389448Theobroma cacaoCDS
CDS-auto389449auto389449Theobroma cacaoCDS
CDS-auto389450auto389450Theobroma cacaoCDS
CDS-auto389451auto389451Theobroma cacaoCDS
CDS-auto389452auto389452Theobroma cacaoCDS
CDS-auto389453auto389453Theobroma cacaoCDS
CDS-auto389454auto389454Theobroma cacaoCDS
CDS-auto389455auto389455Theobroma cacaoCDS
CDS-auto389456auto389456Theobroma cacaoCDS
CDS-auto389457auto389457Theobroma cacaoCDS
CDS-auto389458auto389458Theobroma cacaoCDS
CDS-auto389459auto389459Theobroma cacaoCDS
CDS-auto389460auto389460Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t003520.2 ID=Tc08v2_t003520.2|Name=Tc08v2_t003520.2|organism=Theobroma cacao|type=mRNA|length=3324bp
ATGGGAGTGCCAGCGTTCTACAGATGGTTAGCGGAGAAGTATCCGCTTGT
TATAATGGACGTTATCGAGGAAGAACCGGTGGTTATCGACGGCGTCTCCA
TTCCGGTTGATACGAGTAAACCTAACCCCAACAAACTCGAATTCGATAAT
CTTTATCTCGACATGAACGGGATCATTCATCCTTGTTTCCACCCCGAAGA
CAGACCTTCGCCGACAACTTTTGATGAAGTATTTCAGTGCATGTTTGATT
ACATTGATAGATTGTTTGTTATGGTCCGCCCTCGGAAGCTTTTATTTATG
GCCATTGATGGCGTTGCCCCTCGGGCCAAAATGAACCAACAGCGCTCTAG
GCGATTTAGAGCAGCAAAAGATGCTGCAGAGGCGGCAGCTGAAGAAGCAA
GGCTACGAGAGGAGTTTGAGAGGGAGGGCAGAAGGCTTCCTCCTAAAGAG
GAATCACAACTTTTTGATTCAAATGTTATAACACCTGGCACTCCATTTAT
GGCTGTTTTGTCAATTGCTTTGCAGTACTATATCCACCTTAGGTTAAATT
ATGACCCTGGATGGAAAACAGTCAAGGTTATTCTTTCTGATGCAAATGTT
CCTGGTGAAGGAGAACATAAAATTATGTCATATATTCGGCTCCAAAGGAA
CCTTCCTGGTTTTAATCCAAATACACGCCATTGCCTGTATGGTTTGGATG
CTGATTTAATTATGTTGGCCTTGGCCACTCATGAAGTTCATTTTTCAATC
CTCCGAGAGGTTGTCTTTACCCCTGGACAAGATAAATGCTTCGTGTGTGG
TCAGATGGGCCATGTAGCAGCAGATTGTGAAGGAAAGGCAAAGCGAAAGG
CTGGAGAATTTGATGAGAAAGGTGATGGAAAAGCTGTGGCCAGAAAGCCT
TACCAGTTTCTGAACATATGGACACTTAGGGAGTATCTGGAATATGAGAT
GAGAATCCCCAACCTTCCTTTTGAAATGGACTTGGAGCGTGTTGTGGATG
ATTTTATATTCATGTGCTTCTTTGTTGGCAATGATTTTTTACCTCATATG
CCCACACTAGAGATTCGTGAGGGTGCAATCAACTTGCTAATGGCTGCATA
CAAGAAGGAATTGAGGTCATTGGGTGGTTATTTGACCAATGGAAGCAAGC
CAAATTTGAGCAGGGTAGAGCATTTTATCCAGGCTGTGGGATCCTATGAA
GATAAAATATTCCAGAAAAGAGCACGATTGCATCAGCGTCAAGCAGAAAG
AATCAAGCGTGAAAAAGCACAAGCTAGAAGAGGAGATGATGTGGAGCCTC
AAATTCAACCTGATTCTCTGGTTCCAGTTGCTAGATTTCACGGTTCCCGT
CTTGCCTCAGGCCCTTCACCTGCACCATTTCAGCAAACAATGGAGTCTAA
TGGTAATGGATCCTCTGGTCAGCCGCACAAAGTGCGACGTTTATCTTCAG
GAGCCACTATTGGTGCTGCTATCGTCGAAGCAGAGGATAGTATTGAAACA
GAAGAACATGAGAACAAAGAAGAATTGAAAGCAAAACTTAAGGAGTTGAT
CCGTGACAAATCTGATGTTTTTAACTCCAAAAATCACGAGGAAGATAAGA
TTAAACTGGGAGAACCAGGATGGAAAGAAAGGTATTATGAAGAAAAGTTT
TCAGCAAAAACTCCAGAGGAAATGGAAGCAATACGAAAAGATGTTGTTTT
GAGGTACACGGAAGGTCTATGTTGGGTTATGCACTATTACTATGAAGGGG
TTTGTTCTTGGAGGTGGTTTTATCCTTATCATTATGCACCCTTTGCATCT
GATCTAAAGGATCTTGGTCAGCTAGATATTCAGTTTGAGCTGGGCTCCCC
CTTCAAACCATTCAATCAGTTATTGGGGGTTTTTCCTGCGGCAAGTGCCC
ATGCACTTCCTGAGCAGTATAGGAAATTGATGACTGATCCAAATTCACCC
ATTATTGATTTTTACCCAACTGATTTTGAAATTGATATGAATGGGAAGCG
GTTTTCATGGCAGGGTATTGCAAAATTGCCTTTCATTGATGAAGAACGTC
TTCTTGCAGAGGTTGCAAAAATAGAACATACTTTGACGGAGGAAGAAGCA
CGGAGAAACAGTATAATGTGTGACATGCTTTTTGTGGCAGCATCACACCG
TCTCTCAGAACAAATATTTTCTCTTGACAATCATTGCAGACATTTGACAG
AGAAGGAACGAATTGAAGTCAAGGAGGAAGTCAAACCTGACTTGAGTGAT
GGGATGAATGGTTACATTTCCCCTTGTGCTGGAGATACTCACCCTCCTAT
ATTCAGGTCTCCAATCAAGGACATGGAAGATATATTGGCCAATGAAGTCA
TATGCTGCATATATAGACTTCCAAAAGCTCATAAACATATCACCCGTCCT
CCAGCTGGAGTTACATTCCCTCCTAAGATGGTGCAATTCAGTGATATGAA
GCCCGAACCTGTGTTATGGCATGAAGATTCTGGAAGGAGACCTTGGGAAA
ATGGAAGGTCACCTGCACAAGCTCTTCATTTGATGGAAAGGCATAACCCT
CCGGGAGCCATTTCTGGCCGTAAGCTTGGGGAGGCATCACACAGACTCGT
TGCTAATAGCTTACAGTTGAAGGGAGATCGTAATGGGTTCAGTAATGATA
TACATGCTCCACCACCATTATATGCTGCCGCTCCGTATGTTCCACCAGTC
AATTCCCATGTAAATTATGGGTTTCATAACCAGGGGCAGCATAGAATGGT
TCCTCCTGGACAAGATTACCCCAGTGCAGGTTACCCCTTACCTCAAACTC
CTTTGCGTCCTCCGTATGCCCATGGCTACAATGAACCCTATGGTCCTCAT
CAATACCAAATTCATAACCAAGCAGCTGCCAATAATTTGCACTACCCTCC
GAGACATGATCAGAATGGTGGATCAAGGCACATGCCCAGGTCTATGGCAC
AAGTGTCAATGGAGGCTAGTCCTTATCCTTCTCATCAAGGTGGATATGAT
GCCAACCGGATATATCAAGCACCTGGAATTGGTAGTCATCAGCAGTGGGG
TGGTAGAATGGCTCCACAGGCCAACCAGGATGTTTTGGGAGGCTATGGCC
TACATCAACAAGGTGTAGTTAACCGTGGTATTCATAGAGGTTATGACCAT
CAGCAACAAAGAGGTAACCAATTGCATCATCAGAGGGGAGATCATCACCA
GAGAGGGAGCCAGCCACACAGGGGCAATCAACAACATGGCGGCAACCAAC
AACAAAGAGGAAACTCGTATGCTGCATTAGATAGGCAACGCCATAGGAGG
GCCCCAGTGGAGAATAACCACTGA
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protein sequence of Tc08v2_p003520.2

>Tc08v2_p003520.2 ID=Tc08v2_p003520.2|Name=Tc08v2_p003520.2|organism=Theobroma cacao|type=polypeptide|length=1108bp
MGVPAFYRWLAEKYPLVIMDVIEEEPVVIDGVSIPVDTSKPNPNKLEFDN
LYLDMNGIIHPCFHPEDRPSPTTFDEVFQCMFDYIDRLFVMVRPRKLLFM
AIDGVAPRAKMNQQRSRRFRAAKDAAEAAAEEARLREEFEREGRRLPPKE
ESQLFDSNVITPGTPFMAVLSIALQYYIHLRLNYDPGWKTVKVILSDANV
PGEGEHKIMSYIRLQRNLPGFNPNTRHCLYGLDADLIMLALATHEVHFSI
LREVVFTPGQDKCFVCGQMGHVAADCEGKAKRKAGEFDEKGDGKAVARKP
YQFLNIWTLREYLEYEMRIPNLPFEMDLERVVDDFIFMCFFVGNDFLPHM
PTLEIREGAINLLMAAYKKELRSLGGYLTNGSKPNLSRVEHFIQAVGSYE
DKIFQKRARLHQRQAERIKREKAQARRGDDVEPQIQPDSLVPVARFHGSR
LASGPSPAPFQQTMESNGNGSSGQPHKVRRLSSGATIGAAIVEAEDSIET
EEHENKEELKAKLKELIRDKSDVFNSKNHEEDKIKLGEPGWKERYYEEKF
SAKTPEEMEAIRKDVVLRYTEGLCWVMHYYYEGVCSWRWFYPYHYAPFAS
DLKDLGQLDIQFELGSPFKPFNQLLGVFPAASAHALPEQYRKLMTDPNSP
IIDFYPTDFEIDMNGKRFSWQGIAKLPFIDEERLLAEVAKIEHTLTEEEA
RRNSIMCDMLFVAASHRLSEQIFSLDNHCRHLTEKERIEVKEEVKPDLSD
GMNGYISPCAGDTHPPIFRSPIKDMEDILANEVICCIYRLPKAHKHITRP
PAGVTFPPKMVQFSDMKPEPVLWHEDSGRRPWENGRSPAQALHLMERHNP
PGAISGRKLGEASHRLVANSLQLKGDRNGFSNDIHAPPPLYAAAPYVPPV
NSHVNYGFHNQGQHRMVPPGQDYPSAGYPLPQTPLRPPYAHGYNEPYGPH
QYQIHNQAAANNLHYPPRHDQNGGSRHMPRSMAQVSMEASPYPSHQGGYD
ANRIYQAPGIGSHQQWGGRMAPQANQDVLGGYGLHQQGVVNRGIHRGYDH
QQQRGNQLHHQRGDHHQRGSQPHRGNQQHGGNQQQRGNSYAALDRQRHRR
APVENNH*
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