Tc08v2_t001420.1

Overview
NameTc08v2_t001420.1
Unique NameTc08v2_t001420.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1590
Properties
Property NameValue
NoteCytochrome P450 82A3
Model evidenceSupporting evidence includes similarity to: 6 ESTs, 37 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productcytochrome P450 CYP82D47-like
Cross References
External references for this mRNA
DatabaseAccession
GeneID108663113
GenbankXM_018125726.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g001420Tc08v2_g001420Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p001420.1Tc08v2_p001420.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto385140auto385140Theobroma cacaoexon
exon-auto385141auto385141Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto385142auto385142Theobroma cacaoCDS
CDS-auto385143auto385143Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t001420.1 ID=Tc08v2_t001420.1|Name=Tc08v2_t001420.1|organism=Theobroma cacao|type=mRNA|length=1590bp
ATGGAAACCCTCCTTCCAAGCCCTGCAAGTTGGATGGCTGGCGTCTTTGC
CTTTTTGATCTTCTGCTATTTGTTATTTACGAGAGTGATTAATCGAACAG
GCTCGGGCATGAAGAGAAAAGCTCCGGAAGTGAGCGGTGGAAGGCCATTT
CTAGGCCACCTCCACCTGTTAGGAGGGTCAAAACCAGCCCACGTCGTTTT
GGGTGACTTGGCTGACACATATGGACCGATCTTCACCATCAGGTTAGGCA
TGCACCCAACTCTAGTCGTAAGCAATTGGGAGATTGCTAAAGAGTGTTTC
ACCACCAACGATAAAGCATTTGCCAACCGTCCAAGAACTCTAGCTGCAGA
GCTCTTGGGCTACAATTATGCTATGTTTGGTTTCAGCCCTTACGGCCCCT
ACTGGCGCCAAATTCGCAAGATAGCGACGCTCGAGGTACTGTCGAACCAC
CGCCTGGAGAAGCTCAAACATATACGAGAATCCGAGGTTAGGACATCGAT
TAAAGAACTTTACGAGTTAGGGGTTGAGGGCGTAAGCAATAGTAGTTCAG
GAAAGGTGCTTGTGGAGATGAAGAGATGGTTTTGGACCTTAAACATAAAC
ATGGTTTTCAAGATGGTTGTAGGGAAGAGATACTCTGAGGCTGAAACTTC
GCACGGGAAAGACGAGAACGATGGACGCAGAAAAGCCTTGAGGGATTTCT
TTGAACTGACGGGAACGTTCACGGTTGGGGACTCGCTGCCTTTCTTGAGG
TGGTTGGATCTAGGAGGACATGAGAAGGCCATGAAGAAGACGGCAAAAGA
ACTGGACCACATCCTTGAGGAATGGTTAGAGGAGCATAAGCAGAAGAGAA
ATTCAGGCAACGCGGAAAGTGAGCATGACTTCATGGGCATGATGTTGTCG
CTTCTTAACGATGCTGCAGAGCTCCCTAGCTATGACGCTGATACAATCAA
CAAAGCCACATGCCTGGCTATAATTTTGGGTGGCACAGACACCACGACAG
TGACTATAACATGGGCTCTATCCTTACTACTCAACCACCACCATGTCCTG
GAAAAAGCCCAACATGAATTGGACACCTACGTTGGTAGAGAAAGGCCGGT
GCAAGAATCGGACGTCAAGAACTTGGTCTACCTCCAAGCCATCATCAAGG
AAACAACTCGCTTGTACCCAGCTGCCCCACTCTCCGTGATGCATGAGTCC
GTCGAGGACTGCACCACCGCCGGCTACTTAATCCCGGCTGGAACACGCCT
TCTAGTAAATCTTTCCAAGCTTCAGCGTGATCCGAAAGCCTGGTCCAATC
CGGACGAGTTTCGGCCTGAAAGGTTTCTCACAACCCACAAGCATTTCGAG
GTCAGGGGACAAAACTACGAATTGGTTCCATTTGGTAGCGGTCGAAGAGT
GTGCCCTGGAATTTCGTTTGCGCTTCAGGTTTTGCAGCTCAACCTTGCTA
GTTTGCTACAAGCTTTTGAGATCACAACCCCGTCGGATGAGCCAGTCGAC
ATGGGTGAGGGAGCCGGTTTGACTAATCTCAAAGCCACGCCACTCGAAGT
CAGTCTCACCCCTCGCCTTCCTCCTCATCTCTATAAATAA
back to top

protein sequence of Tc08v2_p001420.1

>Tc08v2_p001420.1 ID=Tc08v2_p001420.1|Name=Tc08v2_p001420.1|organism=Theobroma cacao|type=polypeptide|length=530bp
METLLPSPASWMAGVFAFLIFCYLLFTRVINRTGSGMKRKAPEVSGGRPF
LGHLHLLGGSKPAHVVLGDLADTYGPIFTIRLGMHPTLVVSNWEIAKECF
TTNDKAFANRPRTLAAELLGYNYAMFGFSPYGPYWRQIRKIATLEVLSNH
RLEKLKHIRESEVRTSIKELYELGVEGVSNSSSGKVLVEMKRWFWTLNIN
MVFKMVVGKRYSEAETSHGKDENDGRRKALRDFFELTGTFTVGDSLPFLR
WLDLGGHEKAMKKTAKELDHILEEWLEEHKQKRNSGNAESEHDFMGMMLS
LLNDAAELPSYDADTINKATCLAIILGGTDTTTVTITWALSLLLNHHHVL
EKAQHELDTYVGRERPVQESDVKNLVYLQAIIKETTRLYPAAPLSVMHES
VEDCTTAGYLIPAGTRLLVNLSKLQRDPKAWSNPDEFRPERFLTTHKHFE
VRGQNYELVPFGSGRRVCPGISFALQVLQLNLASLLQAFEITTPSDEPVD
MGEGAGLTNLKATPLEVSLTPRLPPHLYK*
back to top