Tc08v2_t001190.1

Overview
NameTc08v2_t001190.1
Unique NameTc08v2_t001190.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2154
Properties
Property NameValue
NoteProbable thylakoidal processing peptidase 2, chloroplastic
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 13 Proteins, and 98% coverage of the annotated genomic feature by RNAseq alignments
Productprobable thylakoidal processing peptidase 2, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18591278
GenbankXM_007017316.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc08v2_g001190Tc08v2_g001190Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc08v2_p001190.1Tc08v2_p001190.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto384924auto384924Theobroma cacaoexon
exon-auto384925auto384925Theobroma cacaoexon
exon-auto384926auto384926Theobroma cacaoexon
exon-auto384927auto384927Theobroma cacaoexon
exon-auto384928auto384928Theobroma cacaoexon
exon-auto384929auto384929Theobroma cacaoexon
exon-auto384930auto384930Theobroma cacaoexon
exon-auto384931auto384931Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto384932auto384932Theobroma cacaoCDS
CDS-auto384933auto384933Theobroma cacaoCDS
CDS-auto384934auto384934Theobroma cacaoCDS
CDS-auto384935auto384935Theobroma cacaoCDS
CDS-auto384936auto384936Theobroma cacaoCDS
CDS-auto384937auto384937Theobroma cacaoCDS
CDS-auto384938auto384938Theobroma cacaoCDS
CDS-auto384939auto384939Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc08v2_t001190.1 ID=Tc08v2_t001190.1|Name=Tc08v2_t001190.1|organism=Theobroma cacao|type=mRNA|length=2154bp
ATGGCTATCCGTGTCACCGTCACCTACTCCGGCTACGTTGCCCAGAACCT
AGCCTCCAACGCCGGTTTCCGTCTCGGATCTTGCTCCTCCCGATCCGTCC
ACGAATGCTGGCTCCGATCCCGTTTCCTTTCCCCCAACAAAAAATCCGAC
ATCGATCCTTCCCCTGCCCGTAACTACCACGCCGCCGATCTCCGCCACCC
ACGGTCGAGCATGTGCTCGACCCTCGCCGCAGAGATCCTTAAAGATGGTT
GCAATAACCCGATTATCGTTGGTTTGATCTCGCTGATGAAGTCAACGGCT
TATGGTTCTTGTTCCTCTTCTACTACTGTGGGACTTTGCGGAATTTCTCC
TTTTAAAGCCACTTCGATCATCTCTTTCTTGCAGGCATCGAAGTGGCTGC
CGTGTAATGAGCCGGCTTCGGTCGGACCGGAGAGTAGTGAGGTGGATAGA
GGAGGAACAAGCAATGAGGATCGAAGTTTGAGTTTGGAGTTGGATCCCAA
AGGGTTTGTTAAAAGCAGTTGGATTTCGAGGTTGCTAAATGTTTGCTCCG
AAGATGCCAAGGCTGCTTTGACTGCTGTAACTGTAAGTATACTCTTCCGG
TCGTTTATGGCTGAGCCAAGGTCAATTCCGTCAACTTCTATGTACCCTAC
CTTGGATGTTGGCGACCGCGTTTTGGCTGAGAAGGTTTCATATTTCTTTA
GAAAGCCTGAAGTTTCCGATATTGTTATATTCAGGGCACCTCCTATATTG
CAGGAAATTGGTTTCAGTTCAGGGGATGTGTTTATAAAAAGAATAGTGGC
GAAGGCTGGAGACTGTGTTGAAGTTCGTGATGGCAAGCTGTTAATAAATG
GTGTTGCTCAAGATGAAGATTTTGTTCTAGAGCCATTAGCTTATGAAATG
GATCCAGTGGTTGTGCCCGAAGGTTATGTTTTTGTATTGGGAGATAATCG
CAATAACAGTTTTGATTCCCATAACTGGGGTCCACTTCCCATCGAAAACA
TTGTTGGTAGATCTGTATTTCGCTATTGGCCTCCATCCAAAGTTTCAGAT
ACTATACATGATCCACATGTGGGGAAGATTGCTGTAGCAGTTTCTGATGT
ATTGGAGAAGATTGCTTTGAAGCAGGAATGGGAGTTGGAAGGGCTTAACT
TTTCGAAATTGGAAGTGAGCAAGGCTAGGTTTGGGGCTGGCAAAAGATAC
GAGTTTCGGATCCGATTTGGAAAGACTCATCTGCTCTTCAAATTCCCCGA
CGAAGTATCTTCCTGGAGCAAGTTCAGAAAAGGAAGTGGTGGCGATTTCC
TTGATTTTGTCAAGGAAATTAATTCCACAGCGGGGCTCGATTCCTTTAAA
ATGGAAGGTCCCTTTGAGTTACGCCTCGCTCCCAATCACCAAGCTTCCCT
CCTTTTGCCGCTGAACACATCGCATACTGATCTGAAACGGGTCCTTGTTG
GGGAAGGCATCACTGTTGAAGTAAGTGGAGCTCAAGAAGTCTCTCTTTTC
CACGCGTTTAGTTTTGGTTTACCTGTGAATGAAAGTGAAGTCGAGGAGAA
AACTGGATATTGGCCCTTTCGGCAGTCATTCTGCATGCCATTGCTTCCTG
TGAATGTTTTAGGGTCGGTATCTCTTGTTGCCTACCAGACTCGAAACCCT
GATGCCCAAATCGAAGCTGTTTTCCTATCCTCGGATACTATTGAGCTGCT
ACCCGAAAAGTGCTATGGTGATCGTGCTTACATGAAACAGTCTTATCCTA
TGGATTCAATAAGTTTGAGGATATCCAAGCTACGAAAGGTCCTGAGGACC
TTTTTAGGTGACAGAGACAACGGAAATGGTTTTTCCAGTTCTCTTAATGT
GAAAACTAAAGCGTCACCTATTATTCATTTCCAGCTAGAGCTGGAGAAAA
CCATTGGGAAGAATGAGAGTGTTCGTGGTATGTTAGCTGAGTGGAGGTCG
AAGCCAACTGTTGAACGCCTTTGGTTTGATGTAACGGCAAGGATTGAAGC
AGAGAAGTTGAAGCCCCTTATGATGAAGAAGGTCAGACCTTTTGTTGGTG
TAGATACAGTCTCATGGAGTAATTTGTTGTCAAACATTTCTTTTACAAAG
TTCCCATCTATTCTTGTCCCTCCTGAGGCTTTGACACTGGATGTCAAATG
GTAG
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protein sequence of Tc08v2_p001190.1

>Tc08v2_p001190.1 ID=Tc08v2_p001190.1|Name=Tc08v2_p001190.1|organism=Theobroma cacao|type=polypeptide|length=718bp
MAIRVTVTYSGYVAQNLASNAGFRLGSCSSRSVHECWLRSRFLSPNKKSD
IDPSPARNYHAADLRHPRSSMCSTLAAEILKDGCNNPIIVGLISLMKSTA
YGSCSSSTTVGLCGISPFKATSIISFLQASKWLPCNEPASVGPESSEVDR
GGTSNEDRSLSLELDPKGFVKSSWISRLLNVCSEDAKAALTAVTVSILFR
SFMAEPRSIPSTSMYPTLDVGDRVLAEKVSYFFRKPEVSDIVIFRAPPIL
QEIGFSSGDVFIKRIVAKAGDCVEVRDGKLLINGVAQDEDFVLEPLAYEM
DPVVVPEGYVFVLGDNRNNSFDSHNWGPLPIENIVGRSVFRYWPPSKVSD
TIHDPHVGKIAVAVSDVLEKIALKQEWELEGLNFSKLEVSKARFGAGKRY
EFRIRFGKTHLLFKFPDEVSSWSKFRKGSGGDFLDFVKEINSTAGLDSFK
MEGPFELRLAPNHQASLLLPLNTSHTDLKRVLVGEGITVEVSGAQEVSLF
HAFSFGLPVNESEVEEKTGYWPFRQSFCMPLLPVNVLGSVSLVAYQTRNP
DAQIEAVFLSSDTIELLPEKCYGDRAYMKQSYPMDSISLRISKLRKVLRT
FLGDRDNGNGFSSSLNVKTKASPIIHFQLELEKTIGKNESVRGMLAEWRS
KPTVERLWFDVTARIEAEKLKPLMMKKVRPFVGVDTVSWSNLLSNISFTK
FPSILVPPEALTLDVKW*
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