Tc07v2_t014370.1

Overview
NameTc07v2_t014370.1
Unique NameTc07v2_t014370.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1656
Properties
Property NameValue
NotePutative Probable terpene synthase 9
Model evidenceSupporting evidence includes similarity to: 3 ESTs, and 99% coverage of the annotated genomic feature by RNAseq alignments, including 2 samples with support for all annotated introns
Productprobable terpene synthase 9
Cross References
External references for this mRNA
DatabaseAccession
GeneID108662680
GenbankXM_018124108.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g014370Tc07v2_g014370Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p014370.1Tc07v2_p014370.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto380062auto380062Theobroma cacaoexon
exon-auto380063auto380063Theobroma cacaoexon
exon-auto380064auto380064Theobroma cacaoexon
exon-auto380065auto380065Theobroma cacaoexon
exon-auto380066auto380066Theobroma cacaoexon
exon-auto380067auto380067Theobroma cacaoexon
exon-auto380068auto380068Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto380069auto380069Theobroma cacaoCDS
CDS-auto380070auto380070Theobroma cacaoCDS
CDS-auto380071auto380071Theobroma cacaoCDS
CDS-auto380072auto380072Theobroma cacaoCDS
CDS-auto380073auto380073Theobroma cacaoCDS
CDS-auto380074auto380074Theobroma cacaoCDS
CDS-auto380075auto380075Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t014370.1 ID=Tc07v2_t014370.1|Name=Tc07v2_t014370.1|organism=Theobroma cacao|type=mRNA|length=1656bp
ATGGAAGCAAAAGGTATTGAACGGCGATCAGCAGGTAACCTTCCTACTGT
TTGGGATGGTGAACTCGTCAAGTCCTTTACCACACCCTACTCATTCGAGA
GCCATGGCACTCGTCTTGAGGAACTTAAGCAAGGTGGTAGGGATTTACTT
GCTACCATGAAGGAACCACGTGACCAACTGGATCTGATCAACACACTGCA
ACGCTTAGGAGTGGCTTACCACTTTGAAAAGGATATCAAGGACATTCTTG
CTAAACTTGTTGATGCTAACATTGCCACTGATCTTTACACTGTTGCCTTG
CAATTTAGACTAACACGTCAAAATGGTTTCTTCATTAGTACAGATGTGTT
TAATAAGTTCATGGAGAGAGATGGAAAATTCATGGACAGCTTACGGGAAG
ATGTTTTTGGGCTGTTGAGTTTATACGAAGCTTCGCACCTTGGGATGCCA
GAAGAAGATGTTTTTGACGAGGCCCTGAATTTTAGTACAAAACATCTGTT
AGTGTTAAGAAAGAAGATGGATGGAAATAAAGCTGAGCAAATACAACAAT
CACTGGAATATCCACTGCACTGGAGGATGCCCTGGACAGAAGCACGAGAT
TTCATTGCTATCTACCAATATGATGCTAAGATGAATTCGGTTTTGCTCGA
GCTTGCCAAGTTGAACTTCAATATCATGCAATCTGTTTATCTGAAGGAGC
TGCAGGAACTAGTGGAGTGGTGGGAGGACTTGAACTATAAGGAAAGGCTA
CCTTTTGCTCGGGATAGGCTACTTGAGTCTTATTTTTGGACAATGGGGAG
TTGCCCTCCGGGGCCCCAATTCTCCAGATATAGGAGGAACCTCGCGAAAT
TCGCATCCATGGTAACAGCCTTAGATGACATATTTGACGTATATGGCTCA
CTCGATGAGCTTGAGAAGTACACGGATGCAGTAAATAGATGGGATCTTAA
TAAGGCAATGGAGGAACTTCCAGAGTACATGAAAGTATCCTTCTCAGCGA
TGTACAACCATGTTAGTGAAATGGTCCAAGATGCCTTGAAAGATAATGGC
ATGGATATTTCACCCTATATTAAGGAACAGTGGTCTTGTTATGTTAGAGG
ATATCTCAAAGAAGCACGATGGTTTCACAGTGGATACACTCCAACGGCGG
ATGAATATCTTGAGAATGCTTCGGTCTCGATTGCTATATCTATATCCATT
GTCTATGGCGTTTTTGGTGTGGCAGGACACTCTATAAACGAATATTTGTC
AGAATTTGTGGAGCATTGGTCTGCCTCTGACTTAGTTAGGTTGCCTGCCT
ACATTATTCGACTCATTGATGATTTAAACACTGCCGAGATTGAAATGAAA
AGGGGAGAATCAATGAATTTCATCCATTTTTACATGACCCAAGAAGGTGT
TTCGGAAGAAGAAGCACGTGATCATGTCAAAGCCTTGATAAGAAATTTGT
GGAAAAAATTGAACAAAGTAATAGTTAAAGATTCTCTTCGAGCACCCGAC
ATTGTGAAAGTTGCTGTCGAAATGACACGATGTACTCATCGGATCTACCA
ATATGGCGATTGGTTTGGCATTCAAAGCAAAGAAAATCAAGATTGTGTCA
AGTCAATCCTTGAGCCCATTCCGATGGAGCAACGTGATCAAGCTTTACTG
AAATAA
back to top

protein sequence of Tc07v2_p014370.1

>Tc07v2_p014370.1 ID=Tc07v2_p014370.1|Name=Tc07v2_p014370.1|organism=Theobroma cacao|type=polypeptide|length=552bp
MEAKGIERRSAGNLPTVWDGELVKSFTTPYSFESHGTRLEELKQGGRDLL
ATMKEPRDQLDLINTLQRLGVAYHFEKDIKDILAKLVDANIATDLYTVAL
QFRLTRQNGFFISTDVFNKFMERDGKFMDSLREDVFGLLSLYEASHLGMP
EEDVFDEALNFSTKHLLVLRKKMDGNKAEQIQQSLEYPLHWRMPWTEARD
FIAIYQYDAKMNSVLLELAKLNFNIMQSVYLKELQELVEWWEDLNYKERL
PFARDRLLESYFWTMGSCPPGPQFSRYRRNLAKFASMVTALDDIFDVYGS
LDELEKYTDAVNRWDLNKAMEELPEYMKVSFSAMYNHVSEMVQDALKDNG
MDISPYIKEQWSCYVRGYLKEARWFHSGYTPTADEYLENASVSIAISISI
VYGVFGVAGHSINEYLSEFVEHWSASDLVRLPAYIIRLIDDLNTAEIEMK
RGESMNFIHFYMTQEGVSEEEARDHVKALIRNLWKKLNKVIVKDSLRAPD
IVKVAVEMTRCTHRIYQYGDWFGIQSKENQDCVKSILEPIPMEQRDQALL
K*
back to top