Tc07v2_t011980.1

Overview
NameTc07v2_t011980.1
Unique NameTc07v2_t011980.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length615
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
ProductDNA polymerase zeta processivity subunit
NoteDNA polymerase zeta processivity subunit
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594574
GenbankXM_007022179.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g011980Tc07v2_g011980Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p011980.1Tc07v2_p011980.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto376128auto376128Theobroma cacaoexon
exon-auto376129auto376129Theobroma cacaoexon
exon-auto376130auto376130Theobroma cacaoexon
exon-auto376131auto376131Theobroma cacaoexon
exon-auto376132auto376132Theobroma cacaoexon
exon-auto376133auto376133Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto376134auto376134Theobroma cacaoCDS
CDS-auto376135auto376135Theobroma cacaoCDS
CDS-auto376136auto376136Theobroma cacaoCDS
CDS-auto376137auto376137Theobroma cacaoCDS
CDS-auto376138auto376138Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t011980.1 ID=Tc07v2_t011980.1|Name=Tc07v2_t011980.1|organism=Theobroma cacao|type=mRNA|length=615bp
ATGGAACGTAAAGATAATCAATCTCCTCGAGGCCATATTGCTGGGATTTT
GGTTGAATTCTTGGAGGTAGCAATCACTTCAGTTGTTTTCCTCAAAGGAA
TTTATTCTCCCGGTGCTTTTGAGAGGAGGAGGTATATGAATGTGGTAGTA
CAGAGGGCACGGCATCCTCAGCTAAGAGACTATATCCATTCTGCGGTTTC
TGGACTTCTTCCTTTCATCGAAAAGGGCCTGGTGGAGAGAGTTGCTGTTA
TCTTTTTCAACACTGACAACATTCCAGTGGAGAGATTTATGTTCAAACTA
ACAGTTAATCAATCTTTTGACTCAAAGGTGGAAGAAAGTGATCTAGAATT
CTCTCTTAGATCATTCTTAATTAAACTTTCAGTCTCCCAACCCCTTACAA
AGGTTCTTCCATGTGATTGCAGGTGGGAGATCACGGCTTACTTCCGTTCC
CTTCCTCAGGTTAGAAATAGCAAGGACACAGAGTTGTGGATCTCAACTGA
CACAAAACAGTGGCAACAACCTCCACTAATAACCCCTATCAAGTCGATGA
ACAGTGAACCTCTGGGTGTGCAGTTGTTCTTGGAACATCCCAGCCCATCG
GAACCAAAATCTTGA
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protein sequence of Tc07v2_p011980.1

>Tc07v2_p011980.1 ID=Tc07v2_p011980.1|Name=Tc07v2_p011980.1|organism=Theobroma cacao|type=polypeptide|length=205bp
MERKDNQSPRGHIAGILVEFLEVAITSVVFLKGIYSPGAFERRRYMNVVV
QRARHPQLRDYIHSAVSGLLPFIEKGLVERVAVIFFNTDNIPVERFMFKL
TVNQSFDSKVEESDLEFSLRSFLIKLSVSQPLTKVLPCDCRWEITAYFRS
LPQVRNSKDTELWISTDTKQWQQPPLITPIKSMNSEPLGVQLFLEHPSPS
EPKS*
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