Tc07v2_t009490.1

Overview
NameTc07v2_t009490.1
Unique NameTc07v2_t009490.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1746
Properties
Property NameValue
NoteIndole-3-acetic acid-amido synthetase GH3.17
Model evidenceSupporting evidence includes similarity to: 36 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 3 samples with support for all annotated introns
Productindole-3-acetic acid-amido synthetase GH3.17
Cross References
External references for this mRNA
DatabaseAccession
GeneID18594251
GenbankXM_018124057.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g009490Tc07v2_g009490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p009490.1Tc07v2_p009490.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto370802auto370802Theobroma cacaoexon
exon-auto370803auto370803Theobroma cacaoexon
exon-auto370804auto370804Theobroma cacaoexon
exon-auto370805auto370805Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto370806auto370806Theobroma cacaoCDS
CDS-auto370807auto370807Theobroma cacaoCDS
CDS-auto370808auto370808Theobroma cacaoCDS
CDS-auto370809auto370809Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t009490.1 ID=Tc07v2_t009490.1|Name=Tc07v2_t009490.1|organism=Theobroma cacao|type=mRNA|length=1746bp
ATGGAAACAGATAAGTATTTGAAAATTATGGAGGAGCTGACCAGCAATGC
TCATGAGATGCAGGAAAAACTATTGGAGGAAATATTAAAACGAAATGCAG
GAACTGAATATCTAAAAGGCTACCTCCATGGCCAAGCCGACAAGAAACTG
TTCAAAGAGAATGTTCCCATTTCGACTTACGAAGATATCATGCCTTATAT
TGACCGAATTGCCAACGGAGAGCCATCAGATATCCTTTTAGCTGATCTTG
TACTCGGATTTCTACGAAGCACTGGCACTACGGGAGGGAAGCGAAAGTTG
ATACCGTACACAGCTGAGAGTTTGGACAAAATGTGTTTACAACCAATCCT
AGCTGAGGCTGTCATGGGAAAATATTTTGATGGCTTAGACAAAGGAAAAG
GAATGTACTTTCTTTTTGCCAATCCAGAGGTTGAAACTCCATGTGGTTTA
ATGGAAAGCTCGTATACTACAACCTACTTTAAGAGCAGTGGCTTCGAAAA
CAGTGTGGCTAAAATCTGCACAAGCCCTGTTGAGATAATCTTGTGCTTAG
ACACCCAGCAGAGCATGTACTGCCAATTATTGATTGGTTTACTTCAAAGT
GATCAAGTTTTGAGGGTTGCTACAATCTTTGCATCTACTTTGGTTCGGAG
CATTAAGTTTTTAGAAGATTGCTGGAAAGAGCTATGCTTTAACATAAGGA
CAGGTCGTGCAAGCGATTGGATTACTGATGCAGGATGCAGAAATGCATTG
TCTTCAGTCCTCACCGAGCCAAATCCAGAGTTGGCTGATTCAATAGAACG
TGCATGCGGGGGACAATCATGGCAAGGGATAGTTAAAAAGCTTTTCCCTA
AAACAAAGTATATTGGTGTTCTTGTTACAGGAAGTATGAGCCAATATATC
AAGATTCTTGACTTCTATTGTGGTGGCCTGCCTCTAGTTTCAGAATATTA
TTCTTGTTCTGAAGCTGTTTGTGGTATCAATTTAAAACCTCTAAGCAAGC
CCTCGGAAGTCTCTTACACCTTTCTTCCCAATATGGCCTACTTTGAATTT
CTACCTGTGAAAGAAGACAATGAAAAGTTGACTCAAGAATCTAGGGAAAC
AGAGAATAAAAATGAAGATATTGAACCTGTTGATCTTGTGAATGTGAAGC
TTGGTCAATGTTACGAACTACTTGTCACAACTCTTACAGGTCTATATCGA
TACAATGTTGGAGATGTTCTTATGGCAACTGGTTTCCACAATAATGCTCC
TCAATTCCGGTTTATAGAGCGGAAAAATGTGGCTTTAAACCTTGAATTTG
AAAAAACTACTGAAACAGACCTCTCAAGAGCAGTGACAGATGCCGAAGTC
CTCCTTGAGCCCCTTGGCTTTCTCTTGGTTGGGCACACTAGTTATGCTGA
CACTTCATCGAAACCAGGTCACTATGTATTATTTTGGGAGCTTAAGATTC
CAGGAACTAGCGATATGCCAAAGCTAGATCCCAAGATAATGGAACAATGC
TGCTCTACAGTGGAAAAATCACTTAATTTTCAGTATGGAATTCAGAGGAA
GTACGGTGTAATTGGCCCTTTAGAGATCAGAGTGGTAAAATATGGAACCT
TTGATGCACTTATGGATTTCTATGTATCAAGGGGCGCTTCCATTACTCAA
TACAAGACACCCTGTTGCATCAAATTGGAAGATGCCATAAACGTATTGGA
CTCCAAGGTGGTGGGAAGATACTTCAGCCCCAAAACTCTTGATTAA
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protein sequence of Tc07v2_p009490.1

>Tc07v2_p009490.1 ID=Tc07v2_p009490.1|Name=Tc07v2_p009490.1|organism=Theobroma cacao|type=polypeptide|length=582bp
METDKYLKIMEELTSNAHEMQEKLLEEILKRNAGTEYLKGYLHGQADKKL
FKENVPISTYEDIMPYIDRIANGEPSDILLADLVLGFLRSTGTTGGKRKL
IPYTAESLDKMCLQPILAEAVMGKYFDGLDKGKGMYFLFANPEVETPCGL
MESSYTTTYFKSSGFENSVAKICTSPVEIILCLDTQQSMYCQLLIGLLQS
DQVLRVATIFASTLVRSIKFLEDCWKELCFNIRTGRASDWITDAGCRNAL
SSVLTEPNPELADSIERACGGQSWQGIVKKLFPKTKYIGVLVTGSMSQYI
KILDFYCGGLPLVSEYYSCSEAVCGINLKPLSKPSEVSYTFLPNMAYFEF
LPVKEDNEKLTQESRETENKNEDIEPVDLVNVKLGQCYELLVTTLTGLYR
YNVGDVLMATGFHNNAPQFRFIERKNVALNLEFEKTTETDLSRAVTDAEV
LLEPLGFLLVGHTSYADTSSKPGHYVLFWELKIPGTSDMPKLDPKIMEQC
CSTVEKSLNFQYGIQRKYGVIGPLEIRVVKYGTFDALMDFYVSRGASITQ
YKTPCCIKLEDAINVLDSKVVGRYFSPKTLD*
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