Tc07v2_t002050.3

Overview
NameTc07v2_t002050.3
Unique NameTc07v2_t002050.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1446
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 53 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productheterogeneous nuclear ribonucleoprotein 1, transcript variant X1
NoteRNA-binding family protein isoform 6
Cross References
External references for this mRNA
DatabaseAccession
GeneID18593376
GenbankXM_018124571.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc07v2_g002050Tc07v2_g002050Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc07v2_p002050.3Tc07v2_p002050.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto358412auto358412Theobroma cacaoexon
exon-auto358413auto358413Theobroma cacaoexon
exon-auto358414auto358414Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto358415auto358415Theobroma cacaoCDS
CDS-auto358416auto358416Theobroma cacaoCDS
CDS-auto358417auto358417Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc07v2_t002050.3 ID=Tc07v2_t002050.3|Name=Tc07v2_t002050.3|organism=Theobroma cacao|type=mRNA|length=1446bp
ATGATGGTGATTGCAGATAAGATGGAATCAGATCTTGGTAAACTCTTCAT
TGGTGGGATATCTTGGGACACCGATGAGGAACGTCTCAAGGAGTATTTCA
GGAAGTATGGGGAAGTGGTGGAAGCAATGATCATGAGAGATCGTGTCACA
GGTCGTGCCCGTGGCTTCGGTTTCGTTGTCTTTGCTGATCCTGCTGTTGC
TGAGAGGGTAATTATGGATAAGCATATGATTGATGGTCGCACGGTTGAGG
CAAAGAAGGCTGTTCCTAGGGATGATCAACACATTCTAAACAGGAACGTG
AGTAGCATTACTGGATCTCCTGGTCCTGGACGCACAAAAAAGATTTTTGT
TGGAGGTTTAGCATCTACAGTCACCGAGGGTGACTTTAAGAAGTACTTTG
ATCAGTTTGGTTCAATTACTGATGTTGTGGTGATGTATGATCATAACACG
CAGAGGCCGAGAGGGTTCGGCTTCATTACTTATGATTCAGAGGACGCGGT
AGACAGAGTCCTGCATAAAACATTCCATGAACTCAACGGGAAATTGGTTG
AGGTCAAGAGGGCAGTTCCTAAAGAACTATCTCCAGGCCCCAGCCGCAGC
CCTATGATTGGATATAATTATGGCTTGAGTAGGGCTGCCAACTTCCTCAA
TAGTTACGCTCAGGGATATAATCTTAGCCCACTTGGAGGATTTGGAGTCA
GGATGGATGGTAGGTTTAATCCTCTTGCTAGTGGTCGAACTGGGTTTCCT
CCATTTAGTACCACTGGATATGGAATAGGTATGAATATGGAACCAGGAAT
GAGTCCAAGCTATGGTGGGAGTTCCAACTTTGGCAACGGTCTTGGATATG
GGAGAATAATTAGTCCCTATTACAGTGGGAATTCAAACAGGTATAACACA
CCTATTGGCTATGGTGTAGGAAGTGGAAGAAATGATTCTGTTTTGAGCTC
TGCTACTAGGAATGTCTGGGGAAATGGAGGCCTAAGCAATGCCACAAATG
CTTCCAGCCCTGGTGGTTACTTGGGGTCTGGAAGTGGGAGTTTTGGTTCT
TTAGGAAATAGTGGAGTAAATTGGAGCCCTTCTCCTGCACAAAGTGGAGG
GAATGCTTCTGGCTATACTGGGAGTGCTGGTTATGGGAATGCTGATGATA
ACTATGGTTTGGGAGGGGTAGGATATGGAAGAAACGGTGCAACTGTTGCA
GCTCCAACATCATCATTTGCTGGGTCAACTGGTAGTTTTGAGGGGTCCTA
TGGGGATATCTACCGCAGTGGTTCAGTTTATGGTGACTCAACTTGGCGGT
CTGCAACTCCTGACTTAGATGGCTCTAGCTCATTCAGTTATGGGCTTGGC
AATATATCTTCAGATGTTGCTGTGCGAACTTCTGAGGATTATGTTGGAAG
TTACAGTGTTGCAAGTAGACAGTCTAATAGAGGAATTGCTGCCTAG
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protein sequence of Tc07v2_p002050.3

>Tc07v2_p002050.3 ID=Tc07v2_p002050.3|Name=Tc07v2_p002050.3|organism=Theobroma cacao|type=polypeptide|length=482bp
MMVIADKMESDLGKLFIGGISWDTDEERLKEYFRKYGEVVEAMIMRDRVT
GRARGFGFVVFADPAVAERVIMDKHMIDGRTVEAKKAVPRDDQHILNRNV
SSITGSPGPGRTKKIFVGGLASTVTEGDFKKYFDQFGSITDVVVMYDHNT
QRPRGFGFITYDSEDAVDRVLHKTFHELNGKLVEVKRAVPKELSPGPSRS
PMIGYNYGLSRAANFLNSYAQGYNLSPLGGFGVRMDGRFNPLASGRTGFP
PFSTTGYGIGMNMEPGMSPSYGGSSNFGNGLGYGRIISPYYSGNSNRYNT
PIGYGVGSGRNDSVLSSATRNVWGNGGLSNATNASSPGGYLGSGSGSFGS
LGNSGVNWSPSPAQSGGNASGYTGSAGYGNADDNYGLGGVGYGRNGATVA
APTSSFAGSTGSFEGSYGDIYRSGSVYGDSTWRSATPDLDGSSSFSYGLG
NISSDVAVRTSEDYVGSYSVASRQSNRGIAA*
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