Tc06v2_t020020.1

Overview
NameTc06v2_t020020.1
Unique NameTc06v2_t020020.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1029
Properties
Property NameValue
NoteFarnesyl pyrophosphate synthase 1
Model evidenceSupporting evidence includes similarity to: 18 ESTs, 34 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productfarnesyl pyrophosphate synthase 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597357
GenbankXM_018123315.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g020020Tc06v2_g020020Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p020020.1Tc06v2_p020020.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto353196auto353196Theobroma cacaoexon
exon-auto353197auto353197Theobroma cacaoexon
exon-auto353198auto353198Theobroma cacaoexon
exon-auto353199auto353199Theobroma cacaoexon
exon-auto353200auto353200Theobroma cacaoexon
exon-auto353201auto353201Theobroma cacaoexon
exon-auto353202auto353202Theobroma cacaoexon
exon-auto353203auto353203Theobroma cacaoexon
exon-auto353204auto353204Theobroma cacaoexon
exon-auto353205auto353205Theobroma cacaoexon
exon-auto353206auto353206Theobroma cacaoexon
exon-auto353207auto353207Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto353208auto353208Theobroma cacaoCDS
CDS-auto353209auto353209Theobroma cacaoCDS
CDS-auto353210auto353210Theobroma cacaoCDS
CDS-auto353211auto353211Theobroma cacaoCDS
CDS-auto353212auto353212Theobroma cacaoCDS
CDS-auto353213auto353213Theobroma cacaoCDS
CDS-auto353214auto353214Theobroma cacaoCDS
CDS-auto353215auto353215Theobroma cacaoCDS
CDS-auto353216auto353216Theobroma cacaoCDS
CDS-auto353217auto353217Theobroma cacaoCDS
CDS-auto353218auto353218Theobroma cacaoCDS
CDS-auto353219auto353219Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t020020.1 ID=Tc06v2_t020020.1|Name=Tc06v2_t020020.1|organism=Theobroma cacao|type=mRNA|length=1029bp
ATGGCGGATCGCAGGTCAGCATTTCTCCAAGTCTATTACAAGCTCAAATC
GGAGCTCCTTGAGGATCCTTCGTTCGAATTTACTGATGTTTCTCGTCAAT
GGGTTGACCGGATGCTCGACTACAACGTGCCTGGAGGGAAGCTGAATCGG
GGACTCTCTGTGATTGATAGCTACCGCCTATTGAAAGAAGGAAAAGAATT
GACTGAAAATGAGATTTTTCTTGCAAGTGCTCTCGGTTGGTGTATTGAAT
GGCTTCAGGCATATTTTCTTGTCCTTGATGACATAATGGATAACTCTCAC
ACACGGCGTGGGCATCCTTGTTGGTTTAGAGTGCCCCAGGTTGGTCTGAT
TGCTGTAAATGATGGTATTCTACTTCGCAATCACATCTGCAGGATTCTCA
AAAATCACTTTCGTGAGAAACCTTACTATGTAGATCTCCTAGATTTATTT
AACGAGGTGGAGTTTCAAACAGCTTCAGGACAGATGATAGATCTGATTAC
AACACTTGAAGGAGAAAAAGATCTATCCAAATACTCATTGTCACAGCACC
GACGCATTGTTCAGTACAAGACTGCCTATTATTCATTTTATCTTCCTGTT
GCATGTGCACTGGTTATGTCGGGCGAGAATCTTGACAACCACATTGATGT
AAAGAACATTCTCGTTGATATGGGAATCTACTTTCAAGTACAGGATGATT
ATTTGGATTGCTTCGGTGATCCTGAGACAATTGGTAAGATTGGAACTGAT
ATTGAAGATTTTAAGTGCTCTTGGTTGGTGGTCAAAGCATTAGAAATCTG
CAATGAAGAGCAGAAGAAAGTGTTGCATGAGAACTATGGGAAACTAGATC
CTGTTAATGTTGCTAACGTAAAAGCTCTATACAATGAGCTTAACCTCAAG
GGTGTATTTGAGGAGTATGAAAGCAAGAGCTATGAGAAGCTGATAACCGC
AATCGATGTTCATCCTAGCAAAGCAGTGCAATCAGTGTTGAAGTCCTTCT
TGGCGAAGATTTACAAGAGGGAAAAATAG
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protein sequence of Tc06v2_p020020.1

>Tc06v2_p020020.1 ID=Tc06v2_p020020.1|Name=Tc06v2_p020020.1|organism=Theobroma cacao|type=polypeptide|length=343bp
MADRRSAFLQVYYKLKSELLEDPSFEFTDVSRQWVDRMLDYNVPGGKLNR
GLSVIDSYRLLKEGKELTENEIFLASALGWCIEWLQAYFLVLDDIMDNSH
TRRGHPCWFRVPQVGLIAVNDGILLRNHICRILKNHFREKPYYVDLLDLF
NEVEFQTASGQMIDLITTLEGEKDLSKYSLSQHRRIVQYKTAYYSFYLPV
ACALVMSGENLDNHIDVKNILVDMGIYFQVQDDYLDCFGDPETIGKIGTD
IEDFKCSWLVVKALEICNEEQKKVLHENYGKLDPVNVANVKALYNELNLK
GVFEEYESKSYEKLITAIDVHPSKAVQSVLKSFLAKIYKREK*
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