Tc06v2_t017750.1

Overview
NameTc06v2_t017750.1
Unique NameTc06v2_t017750.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1392
Properties
Property NameValue
NoteTryptophan synthase beta chain 1, chloroplastic
Model evidenceSupporting evidence includes similarity to: 34 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Producttryptophan synthase beta chain 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597108
GenbankXM_007025944.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g017750Tc06v2_g017750Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p017750.1Tc06v2_p017750.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto348316auto348316Theobroma cacaoexon
exon-auto348317auto348317Theobroma cacaoexon
exon-auto348318auto348318Theobroma cacaoexon
exon-auto348319auto348319Theobroma cacaoexon
exon-auto348320auto348320Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto348321auto348321Theobroma cacaoCDS
CDS-auto348322auto348322Theobroma cacaoCDS
CDS-auto348323auto348323Theobroma cacaoCDS
CDS-auto348324auto348324Theobroma cacaoCDS
CDS-auto348325auto348325Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t017750.1 ID=Tc06v2_t017750.1|Name=Tc06v2_t017750.1|organism=Theobroma cacao|type=mRNA|length=1392bp
ATGGCCTGCAACATTAAGGCTCTTTCCCTTAACCACCAAATACTTTCAGG
TACCACTGTTGAGAGGAAAATGGGCACTGCTTCGGCTGCTAATGTGTCTG
TGGTTCCTGAAACAGTGACCAAAACCTTGCCTGCTTCGACCACTTTGACC
ATAAAAGCTCCTCAGCCAGAGAGATTACTGATTAAAACCGTTGATAGAAA
AGAGATTAATCATGGGAAATTTGGGAGGTTTGGAGGGAAGTATGTGCCTG
AGACCCTCATGAGTTGCTTGGGGAAACTTGAAGCTGAGTTCAACTTGGTT
TTGCATGATTCTGAGTTTCAGGAGGAGCTCACAACAGCATTGCGGGACTA
TGTTGGAAGGGAGACACCTTTATACTTTGCTCAGCGGTTGACGGATCACT
ACAAGAACAGTCGAGGAGAGGGGCCAGAGATTTACCTGAAGAGAGAGGAT
CTCAGCCATGGTGGTGCTCACAAGATCAACAACGCGATAGCGCAGGCAAT
GATTGCCAAACGCATGGGGCGGAAAACCATTGTGGCTGCCACGGGCGCTG
GTCAGCATGGAGTTGCAACAGCTGCTGCATGTGCCAAACTTTCACTGGAG
TGTACCATCTTCATGGGAGCCACAGATATGGAAAAACAGGCTTCTAATGT
CCTACTGATGAAGCTTCTTGGTGCTAAGGTAGAATCTGTTGAGGGGGCAT
TCAAAGAGGCGAGTTCACAAGCGATCCGAGAGTGGGTGGGGAACCTGGAA
ACCAGCTATTACCTGACAGGAACAGTCGTAGGGCCACATCCATGTCCGAG
CATGGTACGTGAATTTCAATCTGTTATTGGGAAGGAAACAAGAAGACAGG
CGATGGAGAAATGGGGCGGCAAACCTGATGTGCTCGTGGCTTGCATAGGG
AGTGGATCCAATGCCTTAGGTTTGTTCCACGAATTCATAAATGACGAAGA
TGTAAGGTTGATTGGGGTTGAGGCTGCTGGGTTTGGGCTGGACAGCGGCA
GACACTCTGCAACTCTAGCTAGAGGAGACGTTGGTGTGTATCATGGGGCA
ATGAGCTATCTGTTGCAAGATGCGGAAGGACAAATTTTGGGGCCACATTC
CATTGGTGTGGGGCTTGAGTACCCGGGGGTTGGACCTGAGGTCAGCTTTT
TAAAGGAAACAGGTCGTGCAGAGTTCCATTCTGCAACCGACCAAGAAGCC
ATTGATGCATACCGACGGCTATGCAAATTGGAAGGCATATTCCCAGCGTT
GGAGGCCTCTCATGCATTGGCCTTCCTGGAGAAACTATGTCCAACTCTTG
CCAATGGAACCAAGGTTGTGGTGAACATCAGCGGCCGCGGGGATAAAGAC
TCGGACATTGTCTTCCAGTACAAACCCCATTCAATGACTTAA
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protein sequence of Tc06v2_p017750.1

>Tc06v2_p017750.1 ID=Tc06v2_p017750.1|Name=Tc06v2_p017750.1|organism=Theobroma cacao|type=polypeptide|length=464bp
MACNIKALSLNHQILSGTTVERKMGTASAANVSVVPETVTKTLPASTTLT
IKAPQPERLLIKTVDRKEINHGKFGRFGGKYVPETLMSCLGKLEAEFNLV
LHDSEFQEELTTALRDYVGRETPLYFAQRLTDHYKNSRGEGPEIYLKRED
LSHGGAHKINNAIAQAMIAKRMGRKTIVAATGAGQHGVATAAACAKLSLE
CTIFMGATDMEKQASNVLLMKLLGAKVESVEGAFKEASSQAIREWVGNLE
TSYYLTGTVVGPHPCPSMVREFQSVIGKETRRQAMEKWGGKPDVLVACIG
SGSNALGLFHEFINDEDVRLIGVEAAGFGLDSGRHSATLARGDVGVYHGA
MSYLLQDAEGQILGPHSIGVGLEYPGVGPEVSFLKETGRAEFHSATDQEA
IDAYRRLCKLEGIFPALEASHALAFLEKLCPTLANGTKVVVNISGRGDKD
SDIVFQYKPHSMT*
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