Tc06v2_t011930.2

Overview
NameTc06v2_t011930.2
Unique NameTc06v2_t011930.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1185
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productsolanesyl diphosphate synthase 3, chloroplastic/mitochondrial, transcript variant X1
NoteSolanesyl diphosphate synthase 3, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596448
GenbankXM_007024920.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g011930Tc06v2_g011930Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p011930.2Tc06v2_p011930.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto337029auto337029Theobroma cacaoexon
exon-auto337030auto337030Theobroma cacaoexon
exon-auto337031auto337031Theobroma cacaoexon
exon-auto337032auto337032Theobroma cacaoexon
exon-auto337033auto337033Theobroma cacaoexon
exon-auto337034auto337034Theobroma cacaoexon
exon-auto337035auto337035Theobroma cacaoexon
exon-auto337036auto337036Theobroma cacaoexon
exon-auto337037auto337037Theobroma cacaoexon
exon-auto337038auto337038Theobroma cacaoexon
exon-auto337039auto337039Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto337040auto337040Theobroma cacaoCDS
CDS-auto337041auto337041Theobroma cacaoCDS
CDS-auto337042auto337042Theobroma cacaoCDS
CDS-auto337043auto337043Theobroma cacaoCDS
CDS-auto337044auto337044Theobroma cacaoCDS
CDS-auto337045auto337045Theobroma cacaoCDS
CDS-auto337046auto337046Theobroma cacaoCDS
CDS-auto337047auto337047Theobroma cacaoCDS
CDS-auto337048auto337048Theobroma cacaoCDS
CDS-auto337049auto337049Theobroma cacaoCDS
CDS-auto337050auto337050Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t011930.2 ID=Tc06v2_t011930.2|Name=Tc06v2_t011930.2|organism=Theobroma cacao|type=mRNA|length=1185bp
ATGACTATTCTATTTTCTCGGGTAGTTTCTAGGATTTCGGGGACCCCCAA
GAAAACCTTTTTTAACTGCCCTCAACTCTGCCAAGCTCTTGTCTTTGGCA
CTAGTTGTCGCTCTCCCACTGATTCTACTCCCAAGGGAGATGCTGTTTCA
CAGGACAAGGTGGACCCGTTTTCACTCGTTGCTCATGAAATGTCACTGGT
TTCAAAGAGGTTGCGTTCATCTGTAGTTGCTCAGGTCCCGGAGCTTGCCT
CAGCTGCTGGATACTTCTTCAAAGAGGGGGTGGAAGGAAAGAGGACATGC
TCTGCGGTCTTGCTATTGATGGCTACAGCTGTGGATATACATAGACCTGA
ATCACCTTTTTGCTGCATTGGAGATACATGGACAATTGAACTGCGTAGAA
GACAGCAACTTATTGCTGAAATAACCGAGATGATCCATGTGGCTAGCCTT
ATTCATGATGATGTCTTGGATGATGCAGATACAAGACGTGGAATTGGTTC
ATTAAGTTTTGTGGTTGGAAATAAGTTAGCAGTGTTGGCCGGAGATTTTC
TGCTTTTTCGAGCTCTTAGGACCCTTGCTTCCTTGAAAAACACAGAGGTT
GTGTCATTACTAGTAACAGCAATAGAGAATCTTGTTACTGGTGAAACTAT
GCAAATGGCAGCCACAATTGAGCAGCGCTGTAGCATGGAGTATTATATGC
AAAAGACATACTACAAGACTGCATCGTTGATTTCAAACAGCTGCAAGGCT
ATTGCCCTTCTGTCTGGCCAAACACCTGGAGTTGCAAAGTTGGCTTTTGA
ATATGGCAAAAATTTGGGATTGGCATATCAATTCATAGATGATATTCTTG
ATTTCACAGGCTCATCAGCTTCCCTTGGAAAGGGTTCTTTATCTGACATA
CGACTGGGGATCATAACTGCTCCTATATTATTTGCAACAGAAGAGTTTCC
TCAGTTGCATGCTGTCATTGAGCAGGGCTTCGACGACCCTGCCAATGTCG
ACACCGCTCTCGAGTACCTACGGAAGAGCCGTGGAATACAAAGGACGAGA
GAGCTAGCAACAAAGCATGCTAGTCTTGCAGCTGCAGCTATTGATTCTCT
GCCTGAAAGCTGCAGCATGGATGTAAGGAAGTCAAGGCAGGCTCTCATTA
ATCTCACTCAAATACTCACCGCAAGGAATAAATGA
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protein sequence of Tc06v2_p011930.2

>Tc06v2_p011930.2 ID=Tc06v2_p011930.2|Name=Tc06v2_p011930.2|organism=Theobroma cacao|type=polypeptide|length=395bp
MTILFSRVVSRISGTPKKTFFNCPQLCQALVFGTSCRSPTDSTPKGDAVS
QDKVDPFSLVAHEMSLVSKRLRSSVVAQVPELASAAGYFFKEGVEGKRTC
SAVLLLMATAVDIHRPESPFCCIGDTWTIELRRRQQLIAEITEMIHVASL
IHDDVLDDADTRRGIGSLSFVVGNKLAVLAGDFLLFRALRTLASLKNTEV
VSLLVTAIENLVTGETMQMAATIEQRCSMEYYMQKTYYKTASLISNSCKA
IALLSGQTPGVAKLAFEYGKNLGLAYQFIDDILDFTGSSASLGKGSLSDI
RLGIITAPILFATEEFPQLHAVIEQGFDDPANVDTALEYLRKSRGIQRTR
ELATKHASLAAAAIDSLPESCSMDVRKSRQALINLTQILTARNK*
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