Tc06v2_t011920.3

Overview
NameTc06v2_t011920.3
Unique NameTc06v2_t011920.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1038
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Productsolanesyl diphosphate synthase 3, chloroplastic/mitochondrial, transcript variant X2
NoteSolanesyl diphosphate synthase 3, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596447
GenbankXM_007024919.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g011920Tc06v2_g011920Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p011920.3Tc06v2_p011920.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto336982auto336982Theobroma cacaoexon
exon-auto336983auto336983Theobroma cacaoexon
exon-auto336984auto336984Theobroma cacaoexon
exon-auto336985auto336985Theobroma cacaoexon
exon-auto336986auto336986Theobroma cacaoexon
exon-auto336987auto336987Theobroma cacaoexon
exon-auto336988auto336988Theobroma cacaoexon
exon-auto336989auto336989Theobroma cacaoexon
exon-auto336990auto336990Theobroma cacaoexon
exon-auto336991auto336991Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto336992auto336992Theobroma cacaoCDS
CDS-auto336993auto336993Theobroma cacaoCDS
CDS-auto336994auto336994Theobroma cacaoCDS
CDS-auto336995auto336995Theobroma cacaoCDS
CDS-auto336996auto336996Theobroma cacaoCDS
CDS-auto336997auto336997Theobroma cacaoCDS
CDS-auto336998auto336998Theobroma cacaoCDS
CDS-auto336999auto336999Theobroma cacaoCDS
CDS-auto337000auto337000Theobroma cacaoCDS
CDS-auto337001auto337001Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t011920.3 ID=Tc06v2_t011920.3|Name=Tc06v2_t011920.3|organism=Theobroma cacao|type=mRNA|length=1038bp
ATGTTGTTTTGTCGGGGATTTTCTCGGATTTCTAGAAATCCTAGAACGAT
CTTGCTCGGTTTCATTCTATCTCGTCCAACTGGCCCTTCTCAATCCCTTC
TTTCTAATCAGTATCTTAACTCTACTCTAAAGGTTTGCGCTGGTAGAGAA
ACTTTTTCTTGGAGTTTACCTGCATTTCTTGGCATTGGACGGCAAATTCA
TCATCAGAGCAGCTCCATCATAGAGGAACAACTTGACCCATTTTCACTCG
TTGCCGATGAGCTGTCACTTCTTGCTAAGAGGTTGCGGTCTATGGTTGTT
GCTGAGGTTCCTAAGCTTGCTTCAGCTGCTGAGTACTTCTTCAAATTGGG
GGTGGAAGGAAAGAGATTTCGTCCTACGGTTTTGCTTTTGATGGCTACAG
CTTTGAATGTTCATATACCTGAACCAACTGCTGGTGGTGTTGGAGATACC
TTGACAACTGATTTACGTACAAGACAGCAGTCTATAGCTGAGATCACAGA
GATGATCCATGTTGCAAGCCTCCTCCATGATGATGTCTTGGATGATGCGG
ATAAAAGACGTGGTATTGGTTCATTGAATGCTGTCATGGGCAATAAGTTG
GCTGTTTTAGCTGGAGATTTTCTGCTTTCTCGAGCTTGTGTGAGCCTTGC
TGCTCTAAAAAATACAGAGGGACTGGCGTTTCAATTGATAGATGATGTTC
TTGATTTCACAGGCACATCAGCATCCCTTGGAAAGGGTTCTCTATCTGAC
ATCCAGCATGGAATTGTAACGGCTCCAATATTGTTTGCCATGGAAGAGTT
TCCCCAGTTACATGCTATTGTTTATCAAGGCTTTGACAACCCTGAAAATG
TCGACATTGCCCTTGAGTACCTTGGGAAGAGTGATGGAATACAGAGGACA
CGAGAGCTAGCCATGAAGCATGCTAACCTTGCTGCAGCAGCAATTGAGTC
TCTACCAGAAAGCAATGATGAGCAAGTAAGAAAGTCGAGGCGGGCACTAG
TAGACCTTACTCAAAGAGTAATAATGAGAAATAAATAA
back to top

protein sequence of Tc06v2_p011920.3

>Tc06v2_p011920.3 ID=Tc06v2_p011920.3|Name=Tc06v2_p011920.3|organism=Theobroma cacao|type=polypeptide|length=346bp
MLFCRGFSRISRNPRTILLGFILSRPTGPSQSLLSNQYLNSTLKVCAGRE
TFSWSLPAFLGIGRQIHHQSSSIIEEQLDPFSLVADELSLLAKRLRSMVV
AEVPKLASAAEYFFKLGVEGKRFRPTVLLLMATALNVHIPEPTAGGVGDT
LTTDLRTRQQSIAEITEMIHVASLLHDDVLDDADKRRGIGSLNAVMGNKL
AVLAGDFLLSRACVSLAALKNTEGLAFQLIDDVLDFTGTSASLGKGSLSD
IQHGIVTAPILFAMEEFPQLHAIVYQGFDNPENVDIALEYLGKSDGIQRT
RELAMKHANLAAAAIESLPESNDEQVRKSRRALVDLTQRVIMRNK*
back to top