Tc06v2_t011920.2

Overview
NameTc06v2_t011920.2
Unique NameTc06v2_t011920.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1257
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 21 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productsolanesyl diphosphate synthase 3, chloroplastic/mitochondrial, transcript variant X1
NoteSolanesyl diphosphate synthase 3, chloroplastic/mitochondrial
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596447
GenbankXM_007024917.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g011920Tc06v2_g011920Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p011920.2Tc06v2_p011920.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto336956auto336956Theobroma cacaoexon
exon-auto336957auto336957Theobroma cacaoexon
exon-auto336958auto336958Theobroma cacaoexon
exon-auto336959auto336959Theobroma cacaoexon
exon-auto336960auto336960Theobroma cacaoexon
exon-auto336961auto336961Theobroma cacaoexon
exon-auto336962auto336962Theobroma cacaoexon
exon-auto336963auto336963Theobroma cacaoexon
exon-auto336964auto336964Theobroma cacaoexon
exon-auto336965auto336965Theobroma cacaoexon
exon-auto336966auto336966Theobroma cacaoexon
exon-auto336967auto336967Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto336968auto336968Theobroma cacaoCDS
CDS-auto336969auto336969Theobroma cacaoCDS
CDS-auto336970auto336970Theobroma cacaoCDS
CDS-auto336971auto336971Theobroma cacaoCDS
CDS-auto336972auto336972Theobroma cacaoCDS
CDS-auto336973auto336973Theobroma cacaoCDS
CDS-auto336974auto336974Theobroma cacaoCDS
CDS-auto336975auto336975Theobroma cacaoCDS
CDS-auto336976auto336976Theobroma cacaoCDS
CDS-auto336977auto336977Theobroma cacaoCDS
CDS-auto336978auto336978Theobroma cacaoCDS
CDS-auto336979auto336979Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t011920.2 ID=Tc06v2_t011920.2|Name=Tc06v2_t011920.2|organism=Theobroma cacao|type=mRNA|length=1257bp
ATGTTGTTTTGTCGGGGATTTTCTCGGATTTCTAGAAATCCTAGAACGAT
CTTGCTCGGTTTCATTCTATCTCGTCCAACTGGCCCTTCTCAATCCCTTC
TTTCTAATCAGTATCTTAACTCTACTCTAAAGGTTTGCGCTGGTAGAGAA
ACTTTTTCTTGGAGTTTACCTGCATTTCTTGGCATTGGACGGCAAATTCA
TCATCAGAGCAGCTCCATCATAGAGGAACAACTTGACCCATTTTCACTCG
TTGCCGATGAGCTGTCACTTCTTGCTAAGAGGTTGCGGTCTATGGTTGTT
GCTGAGGTTCCTAAGCTTGCTTCAGCTGCTGAGTACTTCTTCAAATTGGG
GGTGGAAGGAAAGAGATTTCGTCCTACGGTTTTGCTTTTGATGGCTACAG
CTTTGAATGTTCATATACCTGAACCAACTGCTGGTGGTGTTGGAGATACC
TTGACAACTGATTTACGTACAAGACAGCAGTCTATAGCTGAGATCACAGA
GATGATCCATGTTGCAAGCCTCCTCCATGATGATGTCTTGGATGATGCGG
ATAAAAGACGTGGTATTGGTTCATTGAATGCTGTCATGGGCAATAAGTTG
GCTGTTTTAGCTGGAGATTTTCTGCTTTCTCGAGCTTGTGTGAGCCTTGC
TGCTCTAAAAAATACAGAGGTTGTATCATTAATAGCAACAGTTGTTGAAC
ATCTTGTTACTGGTGAAACCATGCAAATGACCACTTCATCTGAACAGCGT
TGTAGCATGGAATATTACATGCAAAAGACATACTACAAGACTGCTTCCTT
GATATCAAACAGTTGCAAGGCAATTGCCCTTCTTGCTGGGCAAACAGCTG
AAGTTGCAATGTTGGCCTTTGAATATGGCAAACATCTGGGACTGGCGTTT
CAATTGATAGATGATGTTCTTGATTTCACAGGCACATCAGCATCCCTTGG
AAAGGGTTCTCTATCTGACATCCAGCATGGAATTGTAACGGCTCCAATAT
TGTTTGCCATGGAAGAGTTTCCCCAGTTACATGCTATTGTTTATCAAGGC
TTTGACAACCCTGAAAATGTCGACATTGCCCTTGAGTACCTTGGGAAGAG
TGATGGAATACAGAGGACACGAGAGCTAGCCATGAAGCATGCTAACCTTG
CTGCAGCAGCAATTGAGTCTCTACCAGAAAGCAATGATGAGCAAGTAAGA
AAGTCGAGGCGGGCACTAGTAGACCTTACTCAAAGAGTAATAATGAGAAA
TAAATAA
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protein sequence of Tc06v2_p011920.2

>Tc06v2_p011920.2 ID=Tc06v2_p011920.2|Name=Tc06v2_p011920.2|organism=Theobroma cacao|type=polypeptide|length=419bp
MLFCRGFSRISRNPRTILLGFILSRPTGPSQSLLSNQYLNSTLKVCAGRE
TFSWSLPAFLGIGRQIHHQSSSIIEEQLDPFSLVADELSLLAKRLRSMVV
AEVPKLASAAEYFFKLGVEGKRFRPTVLLLMATALNVHIPEPTAGGVGDT
LTTDLRTRQQSIAEITEMIHVASLLHDDVLDDADKRRGIGSLNAVMGNKL
AVLAGDFLLSRACVSLAALKNTEVVSLIATVVEHLVTGETMQMTTSSEQR
CSMEYYMQKTYYKTASLISNSCKAIALLAGQTAEVAMLAFEYGKHLGLAF
QLIDDVLDFTGTSASLGKGSLSDIQHGIVTAPILFAMEEFPQLHAIVYQG
FDNPENVDIALEYLGKSDGIQRTRELAMKHANLAAAAIESLPESNDEQVR
KSRRALVDLTQRVIMRNK*
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