Tc06v2_t011660.3

Overview
NameTc06v2_t011660.3
Unique NameTc06v2_t011660.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1122
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 9 samples with support for all annotated introns
Productphosphatase IMPL1, chloroplastic, transcript variant X3
NotePhosphatase IMPL1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596418
GenbankXM_018123340.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g011660Tc06v2_g011660Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p011660.3Tc06v2_p011660.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto336376auto336376Theobroma cacaoexon
exon-auto336377auto336377Theobroma cacaoexon
exon-auto336378auto336378Theobroma cacaoexon
exon-auto336379auto336379Theobroma cacaoexon
exon-auto336380auto336380Theobroma cacaoexon
exon-auto336381auto336381Theobroma cacaoexon
exon-auto336382auto336382Theobroma cacaoexon
exon-auto336383auto336383Theobroma cacaoexon
exon-auto336384auto336384Theobroma cacaoexon
exon-auto336385auto336385Theobroma cacaoexon
exon-auto336386auto336386Theobroma cacaoexon
exon-auto336387auto336387Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto336388auto336388Theobroma cacaoCDS
CDS-auto336389auto336389Theobroma cacaoCDS
CDS-auto336390auto336390Theobroma cacaoCDS
CDS-auto336391auto336391Theobroma cacaoCDS
CDS-auto336392auto336392Theobroma cacaoCDS
CDS-auto336393auto336393Theobroma cacaoCDS
CDS-auto336394auto336394Theobroma cacaoCDS
CDS-auto336395auto336395Theobroma cacaoCDS
CDS-auto336396auto336396Theobroma cacaoCDS
CDS-auto336397auto336397Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t011660.3 ID=Tc06v2_t011660.3|Name=Tc06v2_t011660.3|organism=Theobroma cacao|type=mRNA|length=1122bp
ATGGGAAGATCTTTAGTTTCCTCCACCAACATTCCTCCCACGTTTTCTCA
AACACCCAGATCAATTTCACCCCCGGTTCACCCGAACCAGTACCAACCTT
ACAAATTCACTGCAAATTCTCCTTTGGGGCATCAAAAAGTTGGATTTTTG
AGCACCAATTCCACAAGAAAACTATGCACGGGAGCCTTGTTATCAGAGGT
TTCTAACCAGAGACAGTATCCCAAAGTTGGTGCCAAATCAACTGGACCAA
TTCCTCCAAGTCAGCTCATTGAAGTTGTTGAGACTGCTGCAAAAGCTGGT
GCTGAGGTGGTGATGGATGCTGTCAACAAACCAAGAAATATCACATATAA
AGGACTAACCGACTTGGTAACCGACACAGATAAAATGAGTGAGGCCGCTA
TTCTTGAAGTAGTAAAAAGGAATTTTGGAGATCACCTGATCCTTGGGGAG
GAGGGAGGAATTATAGGAGATACCTCTTCAGATTATCTTTGGTGTATTGA
TCCTTTAGATGGAACAACAAATTTTGCACACTGTTATCCTAGCTTTGCAG
TTTCAGTGGGTGTTCTGTTTCGAGGAAATCCTGCCGCTGCTTCTGTGGTG
GAATTTGTTGGGGGCCCTATGTGTTGGAATACCCGTACATTTTCTGCTAC
TGCTGGTGGGGGAGCATTTTGTAATGGACAGAAAATCCATCCCAGTCAAA
CTGATAAGGTGGAGCAATCTCTTCTTGTGACTGGGTTTGGATATGAACAT
GATGATGCATGGATTACCAACATCGAATTATTCAAGGAATTTACTGACAG
CAGTAGAGGTGTGAGAAGGCTCGGTGCTGCAGCTGTGGACATGTGCCATG
TAGCTCTTGGAGTAGCAGAAGCGTATTGGGAATATTGTCTAAAACCATGG
GATATGGCTGCTGGTGTATTGATAGTTGAAGAAGCTGGTGGTGCAGTGAC
TCGCATGGATGGTGGAAAGTTTTGTGTCTTTGATAGATCTGTTTTGGTAT
CTAATGGAGCACTTCATGCCAAGCTTTTGGAGAGGATCGCACCTGCAACA
GAGAAACTGAAGAATAAAGGAATTGATTTCTCATTATGGTATAAGCCAGA
GAATTACCTCACTGATCTTTGA
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protein sequence of Tc06v2_p011660.3

>Tc06v2_p011660.3 ID=Tc06v2_p011660.3|Name=Tc06v2_p011660.3|organism=Theobroma cacao|type=polypeptide|length=374bp
MGRSLVSSTNIPPTFSQTPRSISPPVHPNQYQPYKFTANSPLGHQKVGFL
STNSTRKLCTGALLSEVSNQRQYPKVGAKSTGPIPPSQLIEVVETAAKAG
AEVVMDAVNKPRNITYKGLTDLVTDTDKMSEAAILEVVKRNFGDHLILGE
EGGIIGDTSSDYLWCIDPLDGTTNFAHCYPSFAVSVGVLFRGNPAAASVV
EFVGGPMCWNTRTFSATAGGGAFCNGQKIHPSQTDKVEQSLLVTGFGYEH
DDAWITNIELFKEFTDSSRGVRRLGAAAVDMCHVALGVAEAYWEYCLKPW
DMAAGVLIVEEAGGAVTRMDGGKFCVFDRSVLVSNGALHAKLLERIAPAT
EKLKNKGIDFSLWYKPENYLTDL*
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