Tc06v2_t008260.3

Overview
NameTc06v2_t008260.3
Unique NameTc06v2_t008260.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1830
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 2 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 5 samples with support for all annotated introns
Productnuclear poly(A) polymerase 4, transcript variant X3
NoteNuclear poly(A) polymerase 4
Cross References
External references for this mRNA
DatabaseAccession
GeneID18596029
GenbankXM_018123409.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g008260Tc06v2_g008260Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p008260.3Tc06v2_p008260.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto328332auto328332Theobroma cacaoexon
exon-auto328333auto328333Theobroma cacaoexon
exon-auto328334auto328334Theobroma cacaoexon
exon-auto328335auto328335Theobroma cacaoexon
exon-auto328336auto328336Theobroma cacaoexon
exon-auto328337auto328337Theobroma cacaoexon
exon-auto328338auto328338Theobroma cacaoexon
exon-auto328339auto328339Theobroma cacaoexon
exon-auto328340auto328340Theobroma cacaoexon
exon-auto328341auto328341Theobroma cacaoexon
exon-auto328342auto328342Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto328343auto328343Theobroma cacaoCDS
CDS-auto328344auto328344Theobroma cacaoCDS
CDS-auto328345auto328345Theobroma cacaoCDS
CDS-auto328346auto328346Theobroma cacaoCDS
CDS-auto328347auto328347Theobroma cacaoCDS
CDS-auto328348auto328348Theobroma cacaoCDS
CDS-auto328349auto328349Theobroma cacaoCDS
CDS-auto328350auto328350Theobroma cacaoCDS
CDS-auto328351auto328351Theobroma cacaoCDS
CDS-auto328352auto328352Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t008260.3 ID=Tc06v2_t008260.3|Name=Tc06v2_t008260.3|organism=Theobroma cacao|type=mRNA|length=1830bp
ATGGTTGAAGATGCAAAAGCAGTCATTTTAACTTTTGGTTCTTATCGACT
TGGGGTTCATGGACCTGGCTCTGACGTAGACACTTTATGTGTGGGACCAT
CCTATGTGAACCGAGAGGAAGATTTCTTCTTTGTATTGCACAACATCCTG
GCAGAAAGGGAAGAAGTTACTGAGCTACAACCTGTTCCAGATGCTCATGT
CCCTGTAATGAAATTTAAGTTTGATGGAATATCAATTGACCTTCTTTATG
CAAGCATCTCTCTTTTGGTTGTGCCTCAAGATCTTGACATCTCTGATGTG
TCGGTATTGTACAATGTTGATGAGCCTACCGTTCGAAGTCTTAATGGCTG
CCGGGTTGCAGATCAAATTCTGAAACTAGTTCCAAATGCTGAGCATTTTC
GCACAACACTCCGATGTCTGAAGTTCTGGGCTAAAAGGCGTGGTGTTTAT
TCTAATGTGACTGGATTTCTTGGTGGTGTTAATTGGGCTCTTCTTGTAGC
TCGAGTTTGCCAGCTTTATCCCAATGCAGTTCCTATTATGCTTGTTTCAC
GATTTTTTAGGGTCTTTACTCAGTGGCGTTGGCCAAACCCAGTTACGCTT
TGTGCAATTGAAGAAGATGAACTTGGATTTTCTGTATGGGATCCTCGTAA
AAATCCTCGTGATAGGACTCATCTTATGCCAATAATTACACCTGCCTATC
CATGCATGAATTCTAGCTATAATGTATCTGCAAGCACCCTTCGAGTCATG
ACGGAGCAGTTAAAATATGGTAACAACATTTGTGAGGAGATTCAGCTGAA
TAGAGTAAAGTGGAGTGCTCTGTTTGAGCCTTATTTGTTCTTCGAAAGCT
ACAAAAACTATCTTCAGGTTGATGTTGTTGCAGCTGATGCCAATGACTTG
CGTGCTTGGAAAGGCTGGGTGGAATCCCGGCTAAGGCAGCTTACTTTGAT
GATTGAGCGAGTCACTTATGGAAAGTTGCAGTGCCATCCTTATCCTCATG
AGTATGTAGATGCATCTAAGCCATGTGCCTGTTGTGCCTTCTTTATGGGT
TTACAAAGGAAACAGGGGGAAATAGTTCAGGAAGGTCAGCAATTTGATAT
ACGAGGATCAGTTGATGAATTCCGGCATTCGGTAAGCATGTACATGTATT
GGAAACCTGGGATGGAAATCCATGTATCGCATATTCGTAGAAAGCAGCTT
CCGGCTTATGTTTTGCCAGATGGCTACAAACATCCTTGGAATCCACGGGT
TACTCCCCACCATCAGTCTGATAAACTGTCCCATAACAATCATATTGCAT
GTACTGAATCTGGTGGGAAATGCCTTAAAAGGAAAAAGGATCCTGAAGGA
GAAAATAATGAGCATAGTAAGCCGGAGAAACGGCTGAATCTTGATGGTAG
TGAATCTGTTTCTCCTGAGATTATTAGTTGTGAGCTTAGCAGAATGTCTT
CAGGTTGTTCTACATCTGATTTAGATGAAATGAATGGAGTTGCTGAAGGG
AATGCATCATCTAATTCCAGCACTATCAGCTCTTGCTCAAATGAGGATAT
TGGGAATGAATCCAGTGAAGGGAGCAATGGAGGTGATAATGGGAGCATAG
AAGGGATTACTATCCCAGCATCTTCTCAGAGTGATTCATGTGATGCAGAT
TCAAAATCTTCTTTGGAGGATGAACATGCTGATCACAACAGAGTATTTGA
AGATGGATTACAGAAAGAGTTAGAGCCTAATGCCGCTGTTGGTGTGGTTC
TCAAGTCCATGAATGAAGCTGACTCAGAAACTGTGCAGAATACCGTGATA
AGCAGGTTGAATTTGACGTCAACAGCATGA
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protein sequence of Tc06v2_p008260.3

>Tc06v2_p008260.3 ID=Tc06v2_p008260.3|Name=Tc06v2_p008260.3|organism=Theobroma cacao|type=polypeptide|length=610bp
MVEDAKAVILTFGSYRLGVHGPGSDVDTLCVGPSYVNREEDFFFVLHNIL
AEREEVTELQPVPDAHVPVMKFKFDGISIDLLYASISLLVVPQDLDISDV
SVLYNVDEPTVRSLNGCRVADQILKLVPNAEHFRTTLRCLKFWAKRRGVY
SNVTGFLGGVNWALLVARVCQLYPNAVPIMLVSRFFRVFTQWRWPNPVTL
CAIEEDELGFSVWDPRKNPRDRTHLMPIITPAYPCMNSSYNVSASTLRVM
TEQLKYGNNICEEIQLNRVKWSALFEPYLFFESYKNYLQVDVVAADANDL
RAWKGWVESRLRQLTLMIERVTYGKLQCHPYPHEYVDASKPCACCAFFMG
LQRKQGEIVQEGQQFDIRGSVDEFRHSVSMYMYWKPGMEIHVSHIRRKQL
PAYVLPDGYKHPWNPRVTPHHQSDKLSHNNHIACTESGGKCLKRKKDPEG
ENNEHSKPEKRLNLDGSESVSPEIISCELSRMSSGCSTSDLDEMNGVAEG
NASSNSSTISSCSNEDIGNESSEGSNGGDNGSIEGITIPASSQSDSCDAD
SKSSLEDEHADHNRVFEDGLQKELEPNAAVGVVLKSMNEADSETVQNTVI
SRLNLTSTA*
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