Tc06v2_t006680.1

Overview
NameTc06v2_t006680.1
Unique NameTc06v2_t006680.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length609
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 11 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productauxin-responsive protein IAA1
NotePutative Auxin-responsive protein IAA16
Cross References
External references for this mRNA
DatabaseAccession
GeneID18595855
GenbankXM_007023971.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc06v2_g006680Tc06v2_g006680Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc06v2_p006680.1Tc06v2_p006680.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto324864auto324864Theobroma cacaoexon
exon-auto324865auto324865Theobroma cacaoexon
exon-auto324866auto324866Theobroma cacaoexon
exon-auto324867auto324867Theobroma cacaoexon
exon-auto324868auto324868Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto324869auto324869Theobroma cacaoCDS
CDS-auto324870auto324870Theobroma cacaoCDS
CDS-auto324871auto324871Theobroma cacaoCDS
CDS-auto324872auto324872Theobroma cacaoCDS
CDS-auto324873auto324873Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc06v2_t006680.1 ID=Tc06v2_t006680.1|Name=Tc06v2_t006680.1|organism=Theobroma cacao|type=mRNA|length=609bp
ATGTCACCGGAAAATGATGCCGCCGGCTTGAATTTCGAGGCTACCGAGTT
GACTTTGGGGTTGCCTGGAAAGTCTAAGGTAACATCAGATGGTGAAGCTA
AGTCGGGCACCAAACGTGGATTTCTGGAAACCGTTGATCTAAACCTCGGT
GACAAAAAGTGTGGTCAGTCCCAGACTGATGTTCAAGAAGCCGCTAAGTC
TTCTCCTGTTTCAAAGGCACAAGTGGTGGGTTGGCCGCCGGTGAGAGCGT
TGAGAAAGAATGCAATGAAGAGTTGCAAATATGTGAAGGTGGCAGTCGAT
GGAGCTCCATATTTAAGGAAAGTTGATCTTGAGATGTACAATAGCTATCA
GCAGCTGCTAAGTTCCCTTGAAGACATGTTCTCATGTTTCACCATAAGGA
ACTGTTTGAATGAGAAGAAAATAGTAGACCAAGTGAATGGACTTGAGTAT
GTGCCGACATACGAGGACAAGGATGGAGACTGGATGTTGGTTGGAGATGT
ACCATGGCAAATGTTTGTTGACTCATGCAAACGCCTAAGGCTGATGAAAA
GCTCAGAGGCAATTGGATTAGCACCAAGGACACCTCCAAAATGCTCAAGC
ACAACTTAA
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protein sequence of Tc06v2_p006680.1

>Tc06v2_p006680.1 ID=Tc06v2_p006680.1|Name=Tc06v2_p006680.1|organism=Theobroma cacao|type=polypeptide|length=203bp
MSPENDAAGLNFEATELTLGLPGKSKVTSDGEAKSGTKRGFLETVDLNLG
DKKCGQSQTDVQEAAKSSPVSKAQVVGWPPVRALRKNAMKSCKYVKVAVD
GAPYLRKVDLEMYNSYQQLLSSLEDMFSCFTIRNCLNEKKIVDQVNGLEY
VPTYEDKDGDWMLVGDVPWQMFVDSCKRLRLMKSSEAIGLAPRTPPKCSS
TT*
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