Tc05v2_t027290.1

Overview
NameTc05v2_t027290.1
Unique NameTc05v2_t027290.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1272
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 31 ESTs, 24 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
ProductATP-citrate synthase alpha chain protein 2
NoteATP-citrate synthase alpha chain protein 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600621
GenbankXM_007031173.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g027290Tc05v2_g027290Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p027290.1Tc05v2_p027290.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto309911auto309911Theobroma cacaoexon
exon-auto309912auto309912Theobroma cacaoexon
exon-auto309913auto309913Theobroma cacaoexon
exon-auto309914auto309914Theobroma cacaoexon
exon-auto309915auto309915Theobroma cacaoexon
exon-auto309916auto309916Theobroma cacaoexon
exon-auto309917auto309917Theobroma cacaoexon
exon-auto309918auto309918Theobroma cacaoexon
exon-auto309919auto309919Theobroma cacaoexon
exon-auto309920auto309920Theobroma cacaoexon
exon-auto309921auto309921Theobroma cacaoexon
exon-auto309922auto309922Theobroma cacaoexon
exon-auto309923auto309923Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto309924auto309924Theobroma cacaoCDS
CDS-auto309925auto309925Theobroma cacaoCDS
CDS-auto309926auto309926Theobroma cacaoCDS
CDS-auto309927auto309927Theobroma cacaoCDS
CDS-auto309928auto309928Theobroma cacaoCDS
CDS-auto309929auto309929Theobroma cacaoCDS
CDS-auto309930auto309930Theobroma cacaoCDS
CDS-auto309931auto309931Theobroma cacaoCDS
CDS-auto309932auto309932Theobroma cacaoCDS
CDS-auto309933auto309933Theobroma cacaoCDS
CDS-auto309934auto309934Theobroma cacaoCDS
CDS-auto309935auto309935Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t027290.1 ID=Tc05v2_t027290.1|Name=Tc05v2_t027290.1|organism=Theobroma cacao|type=mRNA|length=1272bp
ATGGCCCGCAAGAAGATCAGGGAGTACGACTCCAAGAGGCTTCTGAAAGA
GCACCTCAAACGCCTCGCCAACATCCATCTCCAGATCTGCTCTGCTCAGG
TGACAGAATCTACTGATTTCACTGAGTTGACCAACAAAGAACCCTGGCTT
TCATCCACCAGATTGGTTGTGAAGCCCGATATGTTGTTTGGGAAGCGTGG
AAAGAGTGGCTTGGTTGCATTAAATTTGGATCTTGCTCAAGTTGCTGAAT
TCGTCAAAGCACGCCTTGGCGTTGAGGTTGAAATGGGTGGGTGTAAAGCT
CCTATAACCACATTCATTGTTGAACCTTTCGTCCCCCACGAACAGGAGTA
TTACCTTTCAATAGTCTCTGAGAGGCTTGGTTCAATCATTAGCTTTTCAG
AATGTGGAGGTATTGAAATTGAAGAGAATTGGGATAAGGTTAAGACCATT
TTCCTTCCAACTGAGAAACCTATGACCCAGGAGACATGTGCGCCATTGAT
AGCTACACTCCCTTTGGAAGTTCGCGGGAAGATTGGTGACTTCATCATGG
GTGTCTTCTCTGTCTTTCAGGATCTTGACTTCAGCTTTCTGGAGATGAAT
CCATTTACACTGGTGAACGGGGAACCGTACCCACTGGATATGAGGGGAGA
GCTGGATGACACTGCTGCATTTAAGAACTTCAAGAAGTGGGGTGACATAG
AGTTCCCTCTGCCTTTTGGAAGAGTCATGAGCCCCACAGAAGGATTTATT
CATTCCTTGGATGAAAAGACGAGCGCATCTCTGAAATTCACTGTCTTGAA
TCCAAAAGGGCGTATCTGGACAATGGTTGCCGGAGGTGGTGCTAGTGTCA
TATATGCTGATACTGTTGGAGATTTAGGTTATGCATCGGAACTCGGCAAC
TATGCAGAGTATAGTGGAGCTCCAAATGAGGAGGAGGTCTTGCAATATGC
AAGAGTTGTTGTTGATTGTGCCACTGCAAACCCTGATGGTCGTAAGAGAG
CCCTTCTCATTGGAGGTGGCATTGCTAACTTCACTGATGTTGCTGCTACT
TTCAATGGAATTATTCGAGCATTGAGAGAGAAGGAAGCCAAGTTAAAAGC
AGCAAGAATGCACGTCTATGTTCGAAGAGGTGGTCCAAACTATCAGACTG
GTTTGGCAAGGATGCGTACACTTGGAGAGGAACTGGGAGTACCTCTTGAG
GTTTATGGGCCTGAGGCCACAATGACTGGCATATGCAAGGAGGCAATAGA
TTGCATTATGTCAGAAGCATAG
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protein sequence of Tc05v2_p027290.1

>Tc05v2_p027290.1 ID=Tc05v2_p027290.1|Name=Tc05v2_p027290.1|organism=Theobroma cacao|type=polypeptide|length=424bp
MARKKIREYDSKRLLKEHLKRLANIHLQICSAQVTESTDFTELTNKEPWL
SSTRLVVKPDMLFGKRGKSGLVALNLDLAQVAEFVKARLGVEVEMGGCKA
PITTFIVEPFVPHEQEYYLSIVSERLGSIISFSECGGIEIEENWDKVKTI
FLPTEKPMTQETCAPLIATLPLEVRGKIGDFIMGVFSVFQDLDFSFLEMN
PFTLVNGEPYPLDMRGELDDTAAFKNFKKWGDIEFPLPFGRVMSPTEGFI
HSLDEKTSASLKFTVLNPKGRIWTMVAGGGASVIYADTVGDLGYASELGN
YAEYSGAPNEEEVLQYARVVVDCATANPDGRKRALLIGGGIANFTDVAAT
FNGIIRALREKEAKLKAARMHVYVRRGGPNYQTGLARMRTLGEELGVPLE
VYGPEATMTGICKEAIDCIMSEA*
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