Tc05v2_t023490.1

Overview
NameTc05v2_t023490.1
Unique NameTc05v2_t023490.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length462
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 8 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productsec-independent protein translocase protein TATA, chloroplastic
NoteBacterial sec-independent translocation protein mttA/Hcf106
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600192
GenbankXM_007030510.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g023490Tc05v2_g023490Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p023490.1Tc05v2_p023490.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto301168auto301168Theobroma cacaoexon
exon-auto301169auto301169Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto301170auto301170Theobroma cacaoCDS
CDS-auto301171auto301171Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t023490.1 ID=Tc05v2_t023490.1|Name=Tc05v2_t023490.1|organism=Theobroma cacao|type=mRNA|length=462bp
ATGGAGATCACTTCCATAACTCTCTCTCTCTCAAGACCCCTACCACCTTC
ACTTCCCTTTTCTTCAGCTCACTCTAATTTTATGACCTGCAGTAACAGCA
TTTCTTTGTTGAACAAAACCAAATCTCAAAACAAATCTGTTTTTGTCGTT
GGTCAACCAAGAAGGGGAACAAGAGCTGAACCTGCCAAAAGGGGTCTTAC
TTGCAATGCTTTGTTTGGTCTTGGTGTGCCTGAACTTGTTGTTATTGCTG
GAGTGGCTGCTCTTGTTTTTGGACCAAAGAAGTTGCCTGAAGTTGGGAGG
AGTATTGGGAAAACTGTCAAGAGCTTCCAACAGGCTGCTAAGGAGTTCGA
ATCTGAGATCAAAAAGGGTCCTGAGTCTCCAACAGAGCCATCTGAGGAGA
ATCCGACGGCAGTTATCGAAGAGAATAAACAAGATGTTGAGGTCTCCAAG
GAGAGTGTATGA
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protein sequence of Tc05v2_p023490.1

>Tc05v2_p023490.1 ID=Tc05v2_p023490.1|Name=Tc05v2_p023490.1|organism=Theobroma cacao|type=polypeptide|length=154bp
MEITSITLSLSRPLPPSLPFSSAHSNFMTCSNSISLLNKTKSQNKSVFVV
GQPRRGTRAEPAKRGLTCNALFGLGVPELVVIAGVAALVFGPKKLPEVGR
SIGKTVKSFQQAAKEFESEIKKGPESPTEPSEENPTAVIEENKQDVEVSK
ESV*
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