Tc05v2_t023450.1

Overview
NameTc05v2_t023450.1
Unique NameTc05v2_t023450.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length750
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 15 ESTs, 47 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productauxin-responsive protein IAA16
NoteAuxin-responsive protein IAA16
Cross References
External references for this mRNA
DatabaseAccession
GeneID18600188
GenbankXM_007030505.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g023450Tc05v2_g023450Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p023450.1Tc05v2_p023450.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto301084auto301084Theobroma cacaoexon
exon-auto301085auto301085Theobroma cacaoexon
exon-auto301086auto301086Theobroma cacaoexon
exon-auto301087auto301087Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto301088auto301088Theobroma cacaoCDS
CDS-auto301089auto301089Theobroma cacaoCDS
CDS-auto301090auto301090Theobroma cacaoCDS
CDS-auto301091auto301091Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t023450.1 ID=Tc05v2_t023450.1|Name=Tc05v2_t023450.1|organism=Theobroma cacao|type=mRNA|length=750bp
ATGACTAGCATTATGGACGCGGCGTGTGACAAGTATAGCATGATTAATTT
CGAAGAGACGGAGTTACGTCTAGGATTACCGGGAGGAAATGGAAACGATG
GTGAAATGACGAAAAACAACGGCAAAAGAGGGTTTTCGGAGACCGTTGAT
TTGAAGCTTAACCTTTCGACAGCAAAGGAGGCAGTGGCAGATGAAGCTGA
GAAGGTTAAGGAAAAGAGCACTGTTGCTCCTCGCTCTGCTGACCCTGCAA
AGCCCCCTGCAAAGGCACAAGTGGTGGGATGGCCACCTGTCAGGTCCTTC
CGTAAGAACATCATGGCCGTCCAGAAGAACAGCTCCGACGTTGAGGGCGA
GAAGGCCGGCAGCAGCAACACCACCACCGCCACCGTGGCGGCAGCCTTCG
TTAAGGTCAGCATGGATGGAGCACCATATCTACGCAAGGTGGACTTGAAA
TTGTACAAGAGTTACCAAGAACTTTCTGATGCCTTAGGCAAAATGTTCAG
CTCCTTCACTATTGGTAACTGTGGGTCACAAGGCATGAAAGATTTCATGA
ACGAGAGCAAATTGATAGACCTCTTGAATGGTTCTGAGTATGTTCCTACT
TATGAAGACAAGGATGGAGATTGGATGCTTGTTGGTGATGTCCCATGGGA
AATGTTCGTCGATTCATGCAAACGCTTGCGAATCATGAAGGGATCTGAAG
CGATTGGACTCGCCCCAAGGGCAGTAGAGAAGTGCAAGAACAGAAGCTGA
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protein sequence of Tc05v2_p023450.1

>Tc05v2_p023450.1 ID=Tc05v2_p023450.1|Name=Tc05v2_p023450.1|organism=Theobroma cacao|type=polypeptide|length=250bp
MTSIMDAACDKYSMINFEETELRLGLPGGNGNDGEMTKNNGKRGFSETVD
LKLNLSTAKEAVADEAEKVKEKSTVAPRSADPAKPPAKAQVVGWPPVRSF
RKNIMAVQKNSSDVEGEKAGSSNTTTATVAAAFVKVSMDGAPYLRKVDLK
LYKSYQELSDALGKMFSSFTIGNCGSQGMKDFMNESKLIDLLNGSEYVPT
YEDKDGDWMLVGDVPWEMFVDSCKRLRIMKGSEAIGLAPRAVEKCKNRS*
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