Tc05v2_t020920.1

Overview
NameTc05v2_t020920.1
Unique NameTc05v2_t020920.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length567
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 6 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 13 samples with support for all annotated introns
Product50S ribosomal protein L18, transcript variant X3
NotePutative Endochitinase 3 (Fragment)
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599873
GenbankXM_018121441.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g020920Tc05v2_g020920Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p020920.1Tc05v2_p020920.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto295324auto295324Theobroma cacaoexon
exon-auto295325auto295325Theobroma cacaoexon
exon-auto295326auto295326Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto295327auto295327Theobroma cacaoCDS
CDS-auto295328auto295328Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t020920.1 ID=Tc05v2_t020920.1|Name=Tc05v2_t020920.1|organism=Theobroma cacao|type=mRNA|length=567bp
ATGTTGAGGCAAGCAATAGGGAAGGTTTTGAGCGAAAGGGTAGTTACAAA
TTCTGGAGATAAGCTTCTTTTGCCTTGCTTGTACTTGCCCACAAGTTCTT
TTCATGCTGGACAGGTTCATTGTGCACCAAGAAGTTTTTTCGGAGTAGAG
GATTTTCTTGATGATGATAATAGCAGGCCATACACTTATAAGAAGGAGAA
GAAGTCAAAGAATCCAAGCAAACATGTCTCGTTTAAACAACGGACTGTAG
CCTACATGGAGCCATTTACACTTGACGTCTTCATCTCAAAGCGCTTTGTT
TCTGCTTCGCTTACTCATAGAGTGACAAGTAAGCAGGTTGCTGTTGCTGG
CACAAACTCAAAAGACATTAAAGCCGTACTCAGATCCAGATCAGATATTC
CTGCTTGCTTGGCAATCGGGCGGATATTAGCTGACAGGGCAAGAGAAGCA
GATGTATACACTGCTTCTTACACTCCCAGGGAGAGGGACAAATTTGAAGG
AAAAATCAGAGCAGTGGTTCAGTCCCTCATCGATAATGGAATCGATATTA
AAGTTTATCTTGACTGA
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protein sequence of Tc05v2_p020920.1

>Tc05v2_p020920.1 ID=Tc05v2_p020920.1|Name=Tc05v2_p020920.1|organism=Theobroma cacao|type=polypeptide|length=189bp
MLRQAIGKVLSERVVTNSGDKLLLPCLYLPTSSFHAGQVHCAPRSFFGVE
DFLDDDNSRPYTYKKEKKSKNPSKHVSFKQRTVAYMEPFTLDVFISKRFV
SASLTHRVTSKQVAVAGTNSKDIKAVLRSRSDIPACLAIGRILADRAREA
DVYTASYTPRERDKFEGKIRAVVQSLIDNGIDIKVYLD*
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