Tc05v2_t020400.2

Overview
NameTc05v2_t020400.2
Unique NameTc05v2_t020400.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2298
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 61 ESTs, 50 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 15 samples with support for all annotated introns
Product5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase, transcript variant X2
Note5-methyltetrahydropteroyltriglutamate--homocysteine methyltransferase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599818
GenbankXM_007029962.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g020400Tc05v2_g020400Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p020400.2Tc05v2_p020400.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto294278auto294278Theobroma cacaoexon
exon-auto294279auto294279Theobroma cacaoexon
exon-auto294280auto294280Theobroma cacaoexon
exon-auto294281auto294281Theobroma cacaoexon
exon-auto294282auto294282Theobroma cacaoexon
exon-auto294283auto294283Theobroma cacaoexon
exon-auto294284auto294284Theobroma cacaoexon
exon-auto294285auto294285Theobroma cacaoexon
exon-auto294286auto294286Theobroma cacaoexon
exon-auto294287auto294287Theobroma cacaoexon
exon-auto294288auto294288Theobroma cacaoexon
exon-auto294289auto294289Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto294290auto294290Theobroma cacaoCDS
CDS-auto294291auto294291Theobroma cacaoCDS
CDS-auto294292auto294292Theobroma cacaoCDS
CDS-auto294293auto294293Theobroma cacaoCDS
CDS-auto294294auto294294Theobroma cacaoCDS
CDS-auto294295auto294295Theobroma cacaoCDS
CDS-auto294296auto294296Theobroma cacaoCDS
CDS-auto294297auto294297Theobroma cacaoCDS
CDS-auto294298auto294298Theobroma cacaoCDS
CDS-auto294299auto294299Theobroma cacaoCDS
CDS-auto294300auto294300Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t020400.2 ID=Tc05v2_t020400.2|Name=Tc05v2_t020400.2|organism=Theobroma cacao|type=mRNA|length=2298bp
ATGGCCTCCCACATTGTTGGATATCCCCGCATGGGACCCAAGAGAGAGCT
TAAGTTTGCTTTGGAATCTTTTTGGGACAAGAAGAGCAGCGCCGAGGATC
TGCAGAAGGTTGCAGCTGATCTCAGGTCATCCATATGGAAGCAGATGGCT
GATGCTGGGATTAAGTACATCCCCAGCAACACTTTCTCTTACTATGACCA
GGTGCTTGATACCACTTCAATGCTCGGAGCTGTTCCACCTAGATATAGCT
GGAATGGTGGGGAGATTGGATTTGACACTTACTTCTCCATGGCCAGAGGA
AACGCGTCTGTGCCGGCCATGGAAATGACCAAGTGGTTTGACACCAACTA
CCACTTCATTGTTCCTGAATTGGGACCTGATGTTAATTTCTCTTATGCAT
CTCACAAGGCAGTGGATGAGTACAAGGAAGCTAAGGCGCTTGGAGTAGAC
ACTGTCCCAGTCCTTATCGGCCCTGTCTCATACTTGCTGCTGTCTAAACC
TGCAAAGGGTGTTGAGAAGACCTTTTCTCTTCTCTCTCTCCTCCCCAAAA
TCATCCCTGTCTACAAGGAAGTTATATCTGAGCTTAAGGCAGCTGGTGCT
TCCTGGATTCAGTTTGATGAACCCACCCTTGTCTTGGATCTTGACTCTTA
CAAATTGGAAGCTTTCACTGCTGCTTATGCTGATTTGGAATCGACTCTCT
CCGGCTTGAATGTTTTGGTGGAGACCTACTTTGCTGATCTTACTGCTGAG
GCATTTAAGACCCTCTGTGGACTGAAGGGTGTCACCGCTTATGGTGTGGA
CTTGGTTCGTGGAACCCAGACCATTGGATTGATCAAGAGTGATTTCCCTA
AGGGCAAGTACCTCTTTGCTGGAGTTGTTGATGGAAGGAACATTTGGGCC
AATGATCTTGCTTCTTCTGTCAACACCTTGCAGGAGCTTGAGGCTGTTGT
GGGCAAAGACAAACTTGTGGTGTCCAGCTCCTGCTCACTTCTCCACACTG
CTGTTGATCTAGTAAATGAGACTAAGCTAGATGATGAAATCAAATCCTGG
CTTGCATTTGCTGCCCAGAAAGTTGTTGAAGTCAATGCACTTGCCAAGGC
ATTGGCTGGTCAGAAGGATGAGGCCTTCTTCTCTGCCAATGCTGCTGCTC
TGGCTTCAAGGAAGTCCTCCCCAAGGGTGACCAATGGGGCTGTTCAAAAG
GCTGCTGCTGCTTTGAAGAGCTCTGACCACCGTCGTGCAACTAATGTTAG
TGCTAGACTGGATGCCCAGCAGAAAAAGCTTAACCTTCCAGTCCTTCCCA
CCACAACCATTGGATCCTTCCCTCAAACCTTGGAACTCAGGAGAGTTCGC
CGTGAATTCAAGGCTAAAAAGATCTCTGAGGATGATTATGTTAAAGCCAT
TAAGGAGGAAATTAAGAAGGTTGTTGACCTTCAGGAAGAGCTTGACATTG
ATGTCCTGGTTCACGGAGAGCCTGAGAGAAACGATATGGTTGAGTACTTT
GGTGAGCAGTTGTCTGGTTTTGCTTTCACTGTTAATGGGTGGGTGCAATC
TTACGGATCTCGTTGTGTCAAGCCACCAATCATCTATGGTGATGTTAGCC
GCCCCAATCCCATGACTGTTTTCTGGTCATCTACCGCCCAAAGCATGACT
GCCCGCCCAATGAAGGGAATGCTTACTGGCCCTGTAACCATCCTCAACTG
GTCCTTTGTCAGAAATGATCAGCCTAGATTTGAGACATGCTACCAGATTG
CTTTGGCCATCAAGGACGAAGTGGAGGATCTTGAGAAGGCTGGTATCAAT
GTTATCCAAATTGATGAGGCTGCTTTGAGAGAGGGGTTACCTCTCAGGAA
GTCTGAACATGCCTTCTACTTGAAATGGGCTGTCCACTCCTTCAGGATCA
CCAACTGCGGTGTCCAGGACACTACCCAGATCCACACCCACATGTGCTAC
TCCAACTTCAATGATATCATCCACTCTATTATTGACATGGATGCTGATGT
CATCACCATTGAGAACTCACGTTCAGATGAGAAGCTCCTGTCAGTCTTCC
GTGAAGGAGTGAAGTATGGTGCTGGAATTGGCCCTGGTGTCTATGATATC
CACTCTCCCAGAATACCATCAACCGAAGAGATTGCTGACAGAATTAACAA
GATGCTTGCTGTGCTTGAGACCAACATCTTGTGGGTTAACCCTGACTGTG
GACTCAAGACCCGCAAGTATGCCGAGGTGAAACCAGCCCTCAAAAACATG
GTTGCTGCTGCCAAGTTGCTCCGCACCCAACTTGCCAGTGCTAAGTGA
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protein sequence of Tc05v2_p020400.2

>Tc05v2_p020400.2 ID=Tc05v2_p020400.2|Name=Tc05v2_p020400.2|organism=Theobroma cacao|type=polypeptide|length=766bp
MASHIVGYPRMGPKRELKFALESFWDKKSSAEDLQKVAADLRSSIWKQMA
DAGIKYIPSNTFSYYDQVLDTTSMLGAVPPRYSWNGGEIGFDTYFSMARG
NASVPAMEMTKWFDTNYHFIVPELGPDVNFSYASHKAVDEYKEAKALGVD
TVPVLIGPVSYLLLSKPAKGVEKTFSLLSLLPKIIPVYKEVISELKAAGA
SWIQFDEPTLVLDLDSYKLEAFTAAYADLESTLSGLNVLVETYFADLTAE
AFKTLCGLKGVTAYGVDLVRGTQTIGLIKSDFPKGKYLFAGVVDGRNIWA
NDLASSVNTLQELEAVVGKDKLVVSSSCSLLHTAVDLVNETKLDDEIKSW
LAFAAQKVVEVNALAKALAGQKDEAFFSANAAALASRKSSPRVTNGAVQK
AAAALKSSDHRRATNVSARLDAQQKKLNLPVLPTTTIGSFPQTLELRRVR
REFKAKKISEDDYVKAIKEEIKKVVDLQEELDIDVLVHGEPERNDMVEYF
GEQLSGFAFTVNGWVQSYGSRCVKPPIIYGDVSRPNPMTVFWSSTAQSMT
ARPMKGMLTGPVTILNWSFVRNDQPRFETCYQIALAIKDEVEDLEKAGIN
VIQIDEAALREGLPLRKSEHAFYLKWAVHSFRITNCGVQDTTQIHTHMCY
SNFNDIIHSIIDMDADVITIENSRSDEKLLSVFREGVKYGAGIGPGVYDI
HSPRIPSTEEIADRINKMLAVLETNILWVNPDCGLKTRKYAEVKPALKNM
VAAAKLLRTQLASAK*
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