Tc05v2_t014170.1

Overview
NameTc05v2_t014170.1
Unique NameTc05v2_t014170.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1449
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 86 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Producttranscription factor TGA6
NoteTranscription factor HBP-1b(c38)
Cross References
External references for this mRNA
DatabaseAccession
GeneID18599070
GenbankXM_018121121.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g014170Tc05v2_g014170Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p014170.1Tc05v2_p014170.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto282039auto282039Theobroma cacaoexon
exon-auto282040auto282040Theobroma cacaoexon
exon-auto282041auto282041Theobroma cacaoexon
exon-auto282042auto282042Theobroma cacaoexon
exon-auto282043auto282043Theobroma cacaoexon
exon-auto282044auto282044Theobroma cacaoexon
exon-auto282045auto282045Theobroma cacaoexon
exon-auto282046auto282046Theobroma cacaoexon
exon-auto282047auto282047Theobroma cacaoexon
exon-auto282048auto282048Theobroma cacaoexon
exon-auto282049auto282049Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto282050auto282050Theobroma cacaoCDS
CDS-auto282051auto282051Theobroma cacaoCDS
CDS-auto282052auto282052Theobroma cacaoCDS
CDS-auto282053auto282053Theobroma cacaoCDS
CDS-auto282054auto282054Theobroma cacaoCDS
CDS-auto282055auto282055Theobroma cacaoCDS
CDS-auto282056auto282056Theobroma cacaoCDS
CDS-auto282057auto282057Theobroma cacaoCDS
CDS-auto282058auto282058Theobroma cacaoCDS
CDS-auto282059auto282059Theobroma cacaoCDS
CDS-auto282060auto282060Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t014170.1 ID=Tc05v2_t014170.1|Name=Tc05v2_t014170.1|organism=Theobroma cacao|type=mRNA|length=1449bp
ATGGCTACCAGTAGAGGAAACATGAACAACTCCATCCAACTAGACCACCA
CCAGCATAATCAACATCATCATCATCAAAATCAACAGCAGCAGCAACAAC
AACAGCATCAGCATCAAATACAAGAGCATCATCAAAATCAGATTCCTTAT
GCAATGATGCAATCATCATCATCATCTTCCATCCCTGGAAACTTCATAAG
CAAAGATACTGGAGCTTATGATTTGGGTGAATTAGATCAAGCCCTTTTTC
TCTATCTTGATGGACAAGACCCTTCCACTATTCAAGAGCAAAGACATAAT
TCTGGAATGAGGCCTCCGACTCTGAACATTTTCCCTTCACAACCTATGCA
CGTTGAGCCACCATTATCCACAAAGACAAGTAGAGGATTGGTTTCTCCAG
CAACTAGTGGTTCAAAGAGACCATCAGAGCCGTCCATGGAGTTGGCCAAC
GCCAGAAATGATGCTTCAGGTTCTGCACCAGATCAACCAGCTAAAGCTGT
CAAGCGTGAGGGGAACCGGAAAGGGCCAACATCAAGTTCAGAGCAGGAAG
GACCCAAAACACCAGACCCTAAGACTTTGAGAAGACTTGCTCAGAATAGA
GAGGCAGCAAGGAAAAGCAGGCTAAGAAAAAAGGCTTATGTTCAGCAGTT
AGAGTCAAGTAGGATTAGGCTAACCCAACTGGAACAAGAACTTCAAAGAG
CCAGAGCTCAAGGCATGTTTTTTGGCGGTGGTGTTCTAGGAGGAGAGCAA
GGCCTTCCTGTTGGTATTAACAACATAAGCTCAGACGCTGCTGTGTTTGA
CATCGAGTACGCAAGATGGCTAGAAGAGCACCATCGCCTTATGTGTGAGC
TTCGAGCCGCGGTTCAAGAGCATCTACCGGAGAACGAGCTCCGGATCTTC
GTCGACAACTGTTTAGCACACTTCGACGAGTTGATGAACCTAAAAGGCAT
GGTAGCCAAAACAGATGTCTTTCATCTTGTGTCTGGCATGTGGAAGACTC
CAGCCGAGCGATGCTTCACGTGGATGGGTGGATTTCGGCCCTCTGAGCTC
ATCAAGGTTATACTGAATCAGATTGAGCCATTGACGGAGCAGCAGATAAT
GGGAATATGTGCCTTGCAACAATCCACACAGGAAGCTGAAGAAGCTCTAT
CACAAGGCTTGGAAGCTCTGAATCAGTCCCTCTCTGATATTATAACTTCT
GATTCACTGAGCTGCCCTCCTAATATGACTAACTACATGGGCCAAATGGC
TATCGCCATGAACAAGCTCGCCACCCTCGAAGGTTTTGTTAGACAGGCTG
ATAATCTGAGGCACCAAACCATACACCGGCTGCATCAAATCCTGACGACC
CGTCAAGCTGCAAGGTGTTTTCTGGCGATTGCTGAGTATTTCCATCGCCT
AAGAGCTCTTAGCTCTCTCTGGTTGGCTCGCCCTCGGCAGGAACAATAG
back to top

protein sequence of Tc05v2_p014170.1

>Tc05v2_p014170.1 ID=Tc05v2_p014170.1|Name=Tc05v2_p014170.1|organism=Theobroma cacao|type=polypeptide|length=483bp
MATSRGNMNNSIQLDHHQHNQHHHHQNQQQQQQQQHQHQIQEHHQNQIPY
AMMQSSSSSSIPGNFISKDTGAYDLGELDQALFLYLDGQDPSTIQEQRHN
SGMRPPTLNIFPSQPMHVEPPLSTKTSRGLVSPATSGSKRPSEPSMELAN
ARNDASGSAPDQPAKAVKREGNRKGPTSSSEQEGPKTPDPKTLRRLAQNR
EAARKSRLRKKAYVQQLESSRIRLTQLEQELQRARAQGMFFGGGVLGGEQ
GLPVGINNISSDAAVFDIEYARWLEEHHRLMCELRAAVQEHLPENELRIF
VDNCLAHFDELMNLKGMVAKTDVFHLVSGMWKTPAERCFTWMGGFRPSEL
IKVILNQIEPLTEQQIMGICALQQSTQEAEEALSQGLEALNQSLSDIITS
DSLSCPPNMTNYMGQMAIAMNKLATLEGFVRQADNLRHQTIHRLHQILTT
RQAARCFLAIAEYFHRLRALSSLWLARPRQEQ*
back to top