Tc05v2_t010480.1

Overview
NameTc05v2_t010480.1
Unique NameTc05v2_t010480.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1002
Properties
Property NameValue
ProductPXMP2/4 family protein 3
Model evidenceSupporting evidence includes similarity to: 1 EST, 3 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
NotePeroxisomal membrane 22 kDa family protein isoform 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598578
GenbankXM_007028153.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g010480Tc05v2_g010480Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p010480.1Tc05v2_p010480.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto273772auto273772Theobroma cacaoexon
exon-auto273773auto273773Theobroma cacaoexon
exon-auto273774auto273774Theobroma cacaoexon
exon-auto273775auto273775Theobroma cacaoexon
exon-auto273776auto273776Theobroma cacaoexon
exon-auto273777auto273777Theobroma cacaoexon
exon-auto273778auto273778Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto273779auto273779Theobroma cacaoCDS
CDS-auto273780auto273780Theobroma cacaoCDS
CDS-auto273781auto273781Theobroma cacaoCDS
CDS-auto273782auto273782Theobroma cacaoCDS
CDS-auto273783auto273783Theobroma cacaoCDS
CDS-auto273784auto273784Theobroma cacaoCDS
CDS-auto273785auto273785Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t010480.1 ID=Tc05v2_t010480.1|Name=Tc05v2_t010480.1|organism=Theobroma cacao|type=mRNA|length=1002bp
ATGCCCCGTGTATTCCACTTTGCGAAGCCTATCCTTCCGAAACTCAGTAA
GACTGTAACAATCACCACAGCCATAGACATAAAAGCAGAAAAACACTCTT
CAAGTTTTTCAAGTCGTTTGAGAATTGCCACCATGGTCCCGAATTCTGTG
GCACTTACCCGCACATTCCCTCGCTTGTACAGTATTATGAGTTTTTCTTC
CAAAAACTTGTGCCTTTCTGCACGCCAAACTAGATTTCTGGTAAGAGGGT
TTAAGAGCCGCTCCTATTCATTTTTTTTGAGTTCTACTCATGGGTTTAAG
GAGTTTGGTAGTCGCAAAACGGGAGCTGGGCAGTTGGGTTTTGATTGTTT
CCGGGTTTCAGCAGTTTCGGATGGTGGGTCCCGTGGGATTGGTGGATTCG
GAGGCTCCGGTGATGAGAATTCTGGTGGCAAAGGTGAAGGCGCCGATGGA
AATGGTGGAAGAAATGATTGGTCCTTGCTTTCATGGTATTTAGCTCTTCT
AGCAAAGTATCCTGTGTTCACAAAAGCTGTGACATCTGCACTTTTGACTT
TTATCGGGGATTTAATTTGCCAGCTTGCAATTGATCATGTGCCATCACTA
GACGTGAAAAGGACATTTCTGTTTACACTGTTGGGATTGGTGTTAGTGGG
CCCTACATTGCATTTCTGGTATTTATGTCTAAGTAACTTGGTTAAATTGC
CTGGAGCATCAGGTGCTTTCCTGCGGCTTTTACTAGATCAGTTTCTCTTT
TCTCCTATATTTATTGGAGTTTTCTTATCTACATTGGTGACACTAGAAGG
AAGGCCTTCGCAAGTTGTACCCAAACTTCAACAGGAGTGGTTTTCTGCTG
TTCTTGCGAATTGGCAGCTGTGGATACCTTTCCAATTTCTCAACTTCCGA
TTTGTCCCACAGCAATTTCAGGTCCTTGCTGCAAATTTCATTGCTTTGGT
TTGGAATGTGATTCTCTCATTCAAAGCTCACAAAGAGATACTGACAAAAT
AG
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protein sequence of Tc05v2_p010480.1

>Tc05v2_p010480.1 ID=Tc05v2_p010480.1|Name=Tc05v2_p010480.1|organism=Theobroma cacao|type=polypeptide|length=334bp
MPRVFHFAKPILPKLSKTVTITTAIDIKAEKHSSSFSSRLRIATMVPNSV
ALTRTFPRLYSIMSFSSKNLCLSARQTRFLVRGFKSRSYSFFLSSTHGFK
EFGSRKTGAGQLGFDCFRVSAVSDGGSRGIGGFGGSGDENSGGKGEGADG
NGGRNDWSLLSWYLALLAKYPVFTKAVTSALLTFIGDLICQLAIDHVPSL
DVKRTFLFTLLGLVLVGPTLHFWYLCLSNLVKLPGASGAFLRLLLDQFLF
SPIFIGVFLSTLVTLEGRPSQVVPKLQQEWFSAVLANWQLWIPFQFLNFR
FVPQQFQVLAANFIALVWNVILSFKAHKEILTK*
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