Tc05v2_t010120.4

Overview
NameTc05v2_t010120.4
Unique NameTc05v2_t010120.4
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1431
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 91 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Producttranscription factor HBP-1b(c1), transcript variant X1
NoteTGACG-sequence-specific DNA-binding protein TGA-2.1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598521
GenbankXM_018121781.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g010120Tc05v2_g010120Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p010120.4Tc05v2_p010120.4Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto273165auto273165Theobroma cacaoexon
exon-auto273166auto273166Theobroma cacaoexon
exon-auto273167auto273167Theobroma cacaoexon
exon-auto273168auto273168Theobroma cacaoexon
exon-auto273169auto273169Theobroma cacaoexon
exon-auto273170auto273170Theobroma cacaoexon
exon-auto273171auto273171Theobroma cacaoexon
exon-auto273172auto273172Theobroma cacaoexon
exon-auto273173auto273173Theobroma cacaoexon
exon-auto273174auto273174Theobroma cacaoexon
exon-auto273175auto273175Theobroma cacaoexon
exon-auto273176auto273176Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto273177auto273177Theobroma cacaoCDS
CDS-auto273178auto273178Theobroma cacaoCDS
CDS-auto273179auto273179Theobroma cacaoCDS
CDS-auto273180auto273180Theobroma cacaoCDS
CDS-auto273181auto273181Theobroma cacaoCDS
CDS-auto273182auto273182Theobroma cacaoCDS
CDS-auto273183auto273183Theobroma cacaoCDS
CDS-auto273184auto273184Theobroma cacaoCDS
CDS-auto273185auto273185Theobroma cacaoCDS
CDS-auto273186auto273186Theobroma cacaoCDS
CDS-auto273187auto273187Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t010120.4 ID=Tc05v2_t010120.4|Name=Tc05v2_t010120.4|organism=Theobroma cacao|type=mRNA|length=1431bp
ATGGGCAGTAGAACAGTGAATATTGGTATAGGAAATGATAAGAAAGCTGT
AACAGCGATGCCAAGCTACGTTCCTTCAGTACCCACTTCCAATCCCAGTT
TAGAACATGTGGTTTTGATGACTTATTTCAGCAGCACAGAGGCAAACACC
ATTCGTTCTTCTCGAATACCAGACTTAGGAACCCTTGAGCAATCTCTTGG
ATTTCGCATTGAGGATGCTGTTGATCTTACCAGAAATCCTCTATTTAATC
AAATAAAGTCAAGTACCCAGGCGATAGCTGATGCTCAATTTGGTGCTATA
AATAAGACACTTGCATCTGCAGACAACAACCTCTCTGCTGCCATTGTGGG
GTCACAAACATTAACGCTTAAAAAAGATACCCCACCTAATCTTGTATCCA
TATCAGCTGGTCGGGAGAATTGGGGGGATTCCAATATGGCAGATGCCAGT
CCTAGAACTGATATTTCAACAGATGACACTGATGAGAAAAATCAAAGGTT
TGAAAGAGGTCAAACAAATGCTATTGTGGCCTCTGATTCTAGCGACAGAT
CAAAAGATAAAACAGATCAGAAGACATTGCGTAGGCTTGCGCAAAATCGT
GAGGCTGCAAGAAAGAGCCGGTTAAGGAAAAAGGCATATGTGCAGCAGCT
TGAGAGTAGCCGACTGAAACTGACTCAACTTGAGCAAGAGCTGCAGAGAG
CTCGTCAGCAGGGCATATTTATTTCAAGCTCAGGAGATCAATCCCATTCA
ATGAGTGGAAATGGTGCCCTGGCATTTGATGTTGAGTATGCACGGTGGCT
GGAGGAGCACAATAGGCAGATAAATGAGTTAAGGGCTGCAGTCAATTCAC
ATGCTGGTGACACCGAACTTCGCACCATTGTTGACAACGTCACAGCACAT
TTTGATGACATTTTCAGGTTGAAAGGCATTGCTGCAAAAGCTGATGTTTT
CCATATCTTATCAGGAATGTGGAAAACACCTGCAGAGCGGTGTTTTCTGT
GGATTGGTGGCTTCCGCTCATCTGAGCTTCTTAAGCTTCTTGCGAATCAA
TTGGAGCCTTTAACTGAGCAACAGTTTATGGGTTTCCACAACTTGCAGCA
ATCATCCCAACAGGCTGAAGATGCTTTGTCACAAGGGATGGAAGCATTGC
AACAATCTTTGGCTGAGACGTTGGCCAATGGCTCACCTGGTCCCTCCGGA
TCATCTGGGAATGTGGCAAATTATATGGGTCAAATGGCGATGGCCATGGG
AAAGCTAGGGACCCTTGAGGGGTTCGTTCGTCAGGCTGATAATCTGCGTC
AGCAAACACTGCAACAAATGCACCGTATCTTGACAACTAGGCAATCAGCT
CGTGCCCTTCTTGCAATAAATGACTATTTTTCTAGGCTTCGAGCTCTCAG
TTCTCTTTGGCTGGCCCGGCCACGCGAGTGA
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protein sequence of Tc05v2_p010120.4

>Tc05v2_p010120.4 ID=Tc05v2_p010120.4|Name=Tc05v2_p010120.4|organism=Theobroma cacao|type=polypeptide|length=477bp
MGSRTVNIGIGNDKKAVTAMPSYVPSVPTSNPSLEHVVLMTYFSSTEANT
IRSSRIPDLGTLEQSLGFRIEDAVDLTRNPLFNQIKSSTQAIADAQFGAI
NKTLASADNNLSAAIVGSQTLTLKKDTPPNLVSISAGRENWGDSNMADAS
PRTDISTDDTDEKNQRFERGQTNAIVASDSSDRSKDKTDQKTLRRLAQNR
EAARKSRLRKKAYVQQLESSRLKLTQLEQELQRARQQGIFISSSGDQSHS
MSGNGALAFDVEYARWLEEHNRQINELRAAVNSHAGDTELRTIVDNVTAH
FDDIFRLKGIAAKADVFHILSGMWKTPAERCFLWIGGFRSSELLKLLANQ
LEPLTEQQFMGFHNLQQSSQQAEDALSQGMEALQQSLAETLANGSPGPSG
SSGNVANYMGQMAMAMGKLGTLEGFVRQADNLRQQTLQQMHRILTTRQSA
RALLAINDYFSRLRALSSLWLARPRE*
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