Tc05v2_t009280.1

Overview
NameTc05v2_t009280.1
Unique NameTc05v2_t009280.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length519
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 96% coverage of the annotated genomic feature by RNAseq alignments, including 17 samples with support for all annotated introns
Productuncharacterized LOC108661931
NoteUncharacterized protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID108661931
GenbankXM_018120924.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g009280Tc05v2_g009280Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p009280.1Tc05v2_p009280.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto271564auto271564Theobroma cacaoexon
exon-auto271565auto271565Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto271566auto271566Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t009280.1 ID=Tc05v2_t009280.1|Name=Tc05v2_t009280.1|organism=Theobroma cacao|type=mRNA|length=519bp
ATGTCTAGAAGAGGTGGTAGTCTCGATACCTCTCATAGTGATAGCGAGGG
ATCTCTAGATTCTACGGCTAGAAGCAAATGGCAACTTGATACAGGTGATT
CAGAAGGTGGTCCATCCCGAATTCCTGATAATAGAATTCCTAAGAACTTA
TCAAAATGGGTTCATAATAAGGGGAGCTTCGAGAGTAGCGAGAATTTTGA
AAGTGAGAGTAGCTCCAATACATCGAAAATTGAACAAGATTTCCTTTCGG
AACAACCTGGAGAGCACCCTAGAGAATGGACGAGGGAAGAAATTGCAAGA
GGATATATTCGTTCTAGGAAGAGTGTGACAGTAGTCCGACACTTTCCACC
AGGCTTTGGGAGAAATGTAAGGGGACAACCAGAAAAGGATAAGGAGAAAG
TAACAGTGGCAAGTAAACCCCTTAGAAAAGTGTCAGGTGTACGACATTTT
CCTCCTGGTTGTGGAAGAAATGCTGCATCGATGAGTGATGAAAAATATAG
GAGAATACAACAAGCCTAG
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protein sequence of Tc05v2_p009280.1

>Tc05v2_p009280.1 ID=Tc05v2_p009280.1|Name=Tc05v2_p009280.1|organism=Theobroma cacao|type=polypeptide|length=173bp
MSRRGGSLDTSHSDSEGSLDSTARSKWQLDTGDSEGGPSRIPDNRIPKNL
SKWVHNKGSFESSENFESESSSNTSKIEQDFLSEQPGEHPREWTREEIAR
GYIRSRKSVTVVRHFPPGFGRNVRGQPEKDKEKVTVASKPLRKVSGVRHF
PPGCGRNAASMSDEKYRRIQQA*
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