Tc05v2_t007010.2

Overview
NameTc05v2_t007010.2
Unique NameTc05v2_t007010.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2589
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 22 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 14 samples with support for all annotated introns
Productserine/threonine-protein kinase CTR1, transcript variant X2
NoteSerine/threonine-protein kinase CTR1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598155
GenbankXM_018121720.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g007010Tc05v2_g007010Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p007010.2Tc05v2_p007010.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto267516auto267516Theobroma cacaoexon
exon-auto267517auto267517Theobroma cacaoexon
exon-auto267518auto267518Theobroma cacaoexon
exon-auto267519auto267519Theobroma cacaoexon
exon-auto267520auto267520Theobroma cacaoexon
exon-auto267521auto267521Theobroma cacaoexon
exon-auto267522auto267522Theobroma cacaoexon
exon-auto267523auto267523Theobroma cacaoexon
exon-auto267524auto267524Theobroma cacaoexon
exon-auto267525auto267525Theobroma cacaoexon
exon-auto267526auto267526Theobroma cacaoexon
exon-auto267527auto267527Theobroma cacaoexon
exon-auto267528auto267528Theobroma cacaoexon
exon-auto267529auto267529Theobroma cacaoexon
exon-auto267530auto267530Theobroma cacaoexon
exon-auto267531auto267531Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto267532auto267532Theobroma cacaoCDS
CDS-auto267533auto267533Theobroma cacaoCDS
CDS-auto267534auto267534Theobroma cacaoCDS
CDS-auto267535auto267535Theobroma cacaoCDS
CDS-auto267536auto267536Theobroma cacaoCDS
CDS-auto267537auto267537Theobroma cacaoCDS
CDS-auto267538auto267538Theobroma cacaoCDS
CDS-auto267539auto267539Theobroma cacaoCDS
CDS-auto267540auto267540Theobroma cacaoCDS
CDS-auto267541auto267541Theobroma cacaoCDS
CDS-auto267542auto267542Theobroma cacaoCDS
CDS-auto267543auto267543Theobroma cacaoCDS
CDS-auto267544auto267544Theobroma cacaoCDS
CDS-auto267545auto267545Theobroma cacaoCDS
CDS-auto267546auto267546Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t007010.2 ID=Tc05v2_t007010.2|Name=Tc05v2_t007010.2|organism=Theobroma cacao|type=mRNA|length=2589bp
ATGGAAATGCCCGGTCGAAGATCCAACTACTCTCTCCTAAGCCAGTATCC
GGACGACCAGTACTCCGTTTCCATTTCAGGAGCTCCACCTCCCTACTACG
ATTCGCTTTCGAGTGACGCCACGAGTAATAAGAACAATAAAGTGAAATCG
GAGAGAGGTTTAATAGATTGGGATCAGAATCAGAGTCAGAACCAGCAACA
AGCGAATCGAGTCGGCGGCGGTGGCGGGGGAGGAGGAGGGAATATTTATG
CTTCTTCGATCGGGCTTCAACGGCAATCGAGCGGGAGTAGCTTCGGTGAG
AGCTCGTTATCGGGAGATTATTATGTGCCGACTCTTTCTACGACGGCGGC
GAACGAGATTGATGCATTCGTGTATGGTCATGATGAAAGCTTTAGGCACG
GGGATTTGAGAGCGAAAGTTGGGGGTTCGTCGTCGGGGAAAAGCTGGGCG
CAGCAAACGGAGGAGAGTTATCAGTTGCAGTTGGCGTTGGCTTTGAGGCT
TTCTTCGGAAGCTACCTGTGCGGACGATCCGAACTTTTTGGATCCGGTTC
CAGATGATTCCACAATTCGAACGGCTAGCTCAAGCTCTGCCGAGACAGTT
TCCCATCGGTTCTGGGTGAATGGCTGCTTATCATACTTCGACAAAGTTCC
TGATGGGTTTTATTTAATTCATGGAGTGAATCCATATGTCTGGACTGTGT
GCACTGATCTGCATGAACATGGTCGAATTCCATCAATTGAATCTCTAAGA
TCTGTTGATCCTACTGTCGATTCACCATTAGAAGTAATATTGGTTGACCG
AAGAAGTGATCCCAGCTTAAAGGAACTCCAAAATAGAGTCCACAACATTT
CTTGTAGCTGCATAACTACAAAAGAAGTTGTTGATCAGCTAGCCAAGCTT
GTCTGCAGTCGCATGGGGGGTTCATCTGCTACAGGAGAGGATGACTTTGT
TTCCTATTGGAGGGAGTGCAGTGATGATTTAAAAGATTGCTTAGGTTCAG
TTGTGGTTCCTATAGGTAGCCTATCTGTTGGCCTCTGCAGACATCGAGCT
TTATTATTCAAAGTGCTAGCTGACACAATTGATCTGCCATGTCGGGTTGC
GAAGGGCTGTAAATATTGTAAAAGAGATGATGCTTCCTCCTGCCTTGTTC
GCTTTGGCCTTGACAGGGAGTATCTTGTTGATTTAATTGGGAACCCAGGT
TACTTATGCGAGCCCGATTCCTTGCTCAATGGTCCATCTTCCATCTCAAT
TTCTTCCCCATTGCGTTTTCCATGTCTCAAACCAGCTGTACCTGCCATTG
ATTTCAGGTCATTGGCCAAACAGTATTTTTCAGACTGTGAATCACTTAAT
CTTGTATTTGATGATGCTCCAGCAGGAGCTATTGAAGAAAATCCTGGATT
CTCTCTTTATCCCAAGAAAGTCGATAAGATTGTAACAGGCAGAAATAACC
TGGTGCAGATATCAAGCAATATGGATGATATTTCGCAGTTGCCCCTACAT
CCTAACATTGCGCGGCCAACTGCTCATGATAGAGATTCCCAATATTCACA
GTCTATAATTCACTCAAAGAACATTATTAAAGATCCTTTAAAGCGCATCT
CTCCAATAGGGCATAGAGATGTCCCAATTCTACTCTTGTCTGATCCAATG
GGGGATTCTGATAAGGATTCAAGGTATGCTGAGGGCAGTCAACTTGTTCC
CAGCAAGCCAAGTAGAGAACTTGCCCTTGAAGTTGATGATTTGGACATTC
CATGGAATGATCTTGTTTTAAAAGAGAGAATTGGTGCTGGTTCTTTTGGA
ACTGTCCATCGTGCTGAATGGAATGGCTCGGATGTCGCTGTGAAAATTCT
CATGGAACAAGACTTGCATGCTGAACGCTTTAAAGAATTTTTGAGGGAGG
TTGCAATAATGAAACGTCTACGGCATCCAAATATTGTTCTTTTTATGGGA
GCAGTTACTCAGCCCCCAAACTTGTCCATAGTGACAGAGTACTTATCAAG
AGGTAGCATGTATAGGCTTTTGCATAAGCCTGGTTTGAGAGAGGTGTTGG
ATGAGAGGCGTCGGTTGAGTATGGCCTATGATGTGGCAAAGGGAATGAAT
TATCTTCATAAACGCAATCCTCCTATTGTTCATAGAGATTTAAAATCTCC
AAATCTTTTGGTTGATAAAAAATATACAGTGAAGGTTTGTGATTTTGGGC
TTTCTCGTTTGAAGGCTAACACATTTCTTTCATCCAAGTCAGCAGCTGGA
ACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGTGACGAGCCATCAAACGA
GAAGTCTGATGTATACAGTTTTGGTGTAATTTTGTGGGAGCTTGCAACGT
TACAACAACCTTGGGGCAACTTAAATCCAGCACAGGTTGTAGCAGCTGTT
GGTTTCAAGGGCAAAAGGCTTGATATTCCGCATGATTTGAATCCTCAAGT
GGCTGCCATAATTGAGGATTGTTGGGCCAATGAGCCTTGGAAGCGTCCTT
CATTTTCCAATATCATGGATCGGTTGAAATCGTTGATTAAACCTTCCACC
CCTCAACCAGGGCGTGTTGACATGCCAATGCTTACCTGA
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protein sequence of Tc05v2_p007010.2

>Tc05v2_p007010.2 ID=Tc05v2_p007010.2|Name=Tc05v2_p007010.2|organism=Theobroma cacao|type=polypeptide|length=863bp
MEMPGRRSNYSLLSQYPDDQYSVSISGAPPPYYDSLSSDATSNKNNKVKS
ERGLIDWDQNQSQNQQQANRVGGGGGGGGGNIYASSIGLQRQSSGSSFGE
SSLSGDYYVPTLSTTAANEIDAFVYGHDESFRHGDLRAKVGGSSSGKSWA
QQTEESYQLQLALALRLSSEATCADDPNFLDPVPDDSTIRTASSSSAETV
SHRFWVNGCLSYFDKVPDGFYLIHGVNPYVWTVCTDLHEHGRIPSIESLR
SVDPTVDSPLEVILVDRRSDPSLKELQNRVHNISCSCITTKEVVDQLAKL
VCSRMGGSSATGEDDFVSYWRECSDDLKDCLGSVVVPIGSLSVGLCRHRA
LLFKVLADTIDLPCRVAKGCKYCKRDDASSCLVRFGLDREYLVDLIGNPG
YLCEPDSLLNGPSSISISSPLRFPCLKPAVPAIDFRSLAKQYFSDCESLN
LVFDDAPAGAIEENPGFSLYPKKVDKIVTGRNNLVQISSNMDDISQLPLH
PNIARPTAHDRDSQYSQSIIHSKNIIKDPLKRISPIGHRDVPILLLSDPM
GDSDKDSRYAEGSQLVPSKPSRELALEVDDLDIPWNDLVLKERIGAGSFG
TVHRAEWNGSDVAVKILMEQDLHAERFKEFLREVAIMKRLRHPNIVLFMG
AVTQPPNLSIVTEYLSRGSMYRLLHKPGLREVLDERRRLSMAYDVAKGMN
YLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAG
TPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQVVAAV
GFKGKRLDIPHDLNPQVAAIIEDCWANEPWKRPSFSNIMDRLKSLIKPST
PQPGRVDMPMLT*
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