Tc05v2_t007010.1

Overview
NameTc05v2_t007010.1
Unique NameTc05v2_t007010.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length2394
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 1 EST, 1 Protein, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
Productserine/threonine-protein kinase CTR1, transcript variant X3
NoteSerine/threonine-protein kinase CTR1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18598155
GenbankXM_018121721.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g007010Tc05v2_g007010Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p007010.1Tc05v2_p007010.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto267485auto267485Theobroma cacaoexon
exon-auto267486auto267486Theobroma cacaoexon
exon-auto267487auto267487Theobroma cacaoexon
exon-auto267488auto267488Theobroma cacaoexon
exon-auto267489auto267489Theobroma cacaoexon
exon-auto267490auto267490Theobroma cacaoexon
exon-auto267491auto267491Theobroma cacaoexon
exon-auto267492auto267492Theobroma cacaoexon
exon-auto267493auto267493Theobroma cacaoexon
exon-auto267494auto267494Theobroma cacaoexon
exon-auto267495auto267495Theobroma cacaoexon
exon-auto267496auto267496Theobroma cacaoexon
exon-auto267497auto267497Theobroma cacaoexon
exon-auto267498auto267498Theobroma cacaoexon
exon-auto267499auto267499Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto267500auto267500Theobroma cacaoCDS
CDS-auto267501auto267501Theobroma cacaoCDS
CDS-auto267502auto267502Theobroma cacaoCDS
CDS-auto267503auto267503Theobroma cacaoCDS
CDS-auto267504auto267504Theobroma cacaoCDS
CDS-auto267505auto267505Theobroma cacaoCDS
CDS-auto267506auto267506Theobroma cacaoCDS
CDS-auto267507auto267507Theobroma cacaoCDS
CDS-auto267508auto267508Theobroma cacaoCDS
CDS-auto267509auto267509Theobroma cacaoCDS
CDS-auto267510auto267510Theobroma cacaoCDS
CDS-auto267511auto267511Theobroma cacaoCDS
CDS-auto267512auto267512Theobroma cacaoCDS
CDS-auto267513auto267513Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t007010.1 ID=Tc05v2_t007010.1|Name=Tc05v2_t007010.1|organism=Theobroma cacao|type=mRNA|length=2394bp
ATGGAAATGCCCGGTCGAAGATCCAACTACTCTCTCCTAAGCCAGTATCC
GGACGACCAGTACTCCGTTTCCATTTCAGGAGCTCCACCTCCCTACTACG
ATTCGCTTTCGAGTGACGCCACGAGTAATAAGAACAATAAAGTGAAATCG
GAGAGAGGTTTAATAGATTGGGATCAGAATCAGAGTCAGAACCAGCAACA
AGCGAATCGAGTCGGCGGCGGTGGCGGGGGAGGAGGAGGGAATATTTATG
CTTCTTCGATCGGGCTTCAACGGCAATCGAGCGGGAGTAGCTTCGGTGAG
AGCTCGTTATCGGGAGATTATTATGTGCCGACTCTTTCTACGACGGCGGC
GAACGAGATTGATGCATTCGTGTATGGTCATGATGAAAGCTTTAGGCACG
GGGATTTGAGAGCGAAAGTTGGGGGTTCGTCGTCGGGGAAAAGCTGGGCG
CAGCAAACGGAGGAGAGTTATCAGTTGCAGTTGGCGTTGGCTTTGAGGCT
TTCTTCGGAAGCTACCTGTGCGGACGATCCGAACTTTTTGGATCCGGTTC
CAGATGATTCCACAATTCGAACGGCTAGCTCAAGCTCTGCCGAGACAGTT
TCCCATCGGTTCTGGGTGAATGGCTGCTTATCATACTTCGACAAAGTTCC
TGATGGGTTTTATTTAATTCATGGAGTGAATCCATATGTCTGGACTGTGT
GCACTGATCTGCATGAACATGGTCGAATTCCATCAATTGAATCTCTAAGA
TCTGTTGATCCTACTGTCGATTCACCATTAGAAGTAATATTGGTTGACCG
AAGAAGTGATCCCAGCTTAAAGGAACTCCAAAATAGAGTCCACAACATTT
CTTGTAGCTGCATAACTACAAAAGAAGTTGTTGATCAGCTAGCCAAGCTT
GTCTGCAGTCGCATGGGGGGTTCATCTGCTACAGGAGAGGATGACTTTGT
TTCCTATTGGAGGGAGTGCAGTGATGATTTAAAAGATTGCTTAGGTTCAG
TTGTGGTTCCTATAGGTAGCCTATCTGTTGGCCTCTGCAGACATCGAGCT
TTATTATTCAAAGTGCTAGCTGACACAATTGATCTGCCATGTCGGGTTGC
GAAGGGCTGTAAATATTGTAAAAGAGATGATGCTTCCTCCTGCCTTGTTC
GCTTTGGCCTTGACAGGGAGTATCTTGTTGATTTAATTGGGAACCCAGGT
TACTTATGCGAGCCCGATTCCTTGCTCAATGGTCCATCTTCCATCTCAAT
TTCTTCCCCATTGCGTTTTCCATGTCTCAAACCAGCTGTACCTGCCATTG
ATTTCAGGTCATTGGCCAAACAGTATTTTTCAGACTGTGAATCACTTAAT
CTTGTATTTGATGATGCTCCAGCAGGAGCTATTGAAGAAAATCCTGGATT
CTCTCTTTATCCCAAGAAAGTCGATAAGATTGTAACAGGCAGAAATAACC
TGGTGCAGATATCAAGCAATATGGATGATATTTCGCAGTTGCCCCTACAT
CCTAACATTGCGCGGCCAACTGCTCATGATAGAGATTCCCAATATTCACA
GTCTATAATTCACTCAAAGAACATTATTAAAGATCCTTTAAAGCGCATCT
CTCCAATAGGGCATAGAGATGTCCCAATTCTACTCTTGTCTGATCCAATG
GGGGATTCTGATAAGGATTCAAGGTATGCTGAGGGCAGTCAACTTGTTCC
CAGCAAGCCAAGTAGAGAACTTGCCCTTGAAGTTGATGATTTGGACATTC
CATGGAATGATCTTGTTTTAAAAGAGAGAATTGGTGCTGGTTCTTTTGGA
ACTGTCCATCGTGCTGAATGGAATGGCTCGGATGTCGCTGTGAAAATTCT
CATGGAACAAGACTTGCATGCTGAACGCTTTAAAGAATTTTTGAGGGAGG
TTGCAATAATGAAACGTCTACGGCATCCAAATATTGTTCTTTTTATGGGA
GCAGTTACTCAGCCCCCAAACTTGTCCATAGTGACAGAGTACTTATCAAG
AGGTAGCATGTATAGGCTTTTGCATAAGCCTGGTTTGAGAGAGGTGTTGG
ATGAGAGGCGTCGGTTGAGTATGGCCTATGATGTGGCAAAGGGAATGAAT
TATCTTCATAAACGCAATCCTCCTATTGTTCATAGAGATTTAAAATCTCC
AAATCTTTTGGTTGATAAAAAATATACAGTGAAGGTTTGTGATTTTGGGC
TTTCTCGTTTGAAGGCTAACACATTTCTTTCATCCAAGTCAGCAGCTGGA
ACTCCTGAGTGGATGGCTCCAGAAGTTCTTCGTGACGAGCCATCAAACGA
GAAGTCTGATGTATACAGTTTTGGTGTAATTTTGTGGGAGCTTGCAACGT
TACAACAACCTTGGGGCAACTTAAATCCAGCACAGCCAATGTAA
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protein sequence of Tc05v2_p007010.1

>Tc05v2_p007010.1 ID=Tc05v2_p007010.1|Name=Tc05v2_p007010.1|organism=Theobroma cacao|type=polypeptide|length=798bp
MEMPGRRSNYSLLSQYPDDQYSVSISGAPPPYYDSLSSDATSNKNNKVKS
ERGLIDWDQNQSQNQQQANRVGGGGGGGGGNIYASSIGLQRQSSGSSFGE
SSLSGDYYVPTLSTTAANEIDAFVYGHDESFRHGDLRAKVGGSSSGKSWA
QQTEESYQLQLALALRLSSEATCADDPNFLDPVPDDSTIRTASSSSAETV
SHRFWVNGCLSYFDKVPDGFYLIHGVNPYVWTVCTDLHEHGRIPSIESLR
SVDPTVDSPLEVILVDRRSDPSLKELQNRVHNISCSCITTKEVVDQLAKL
VCSRMGGSSATGEDDFVSYWRECSDDLKDCLGSVVVPIGSLSVGLCRHRA
LLFKVLADTIDLPCRVAKGCKYCKRDDASSCLVRFGLDREYLVDLIGNPG
YLCEPDSLLNGPSSISISSPLRFPCLKPAVPAIDFRSLAKQYFSDCESLN
LVFDDAPAGAIEENPGFSLYPKKVDKIVTGRNNLVQISSNMDDISQLPLH
PNIARPTAHDRDSQYSQSIIHSKNIIKDPLKRISPIGHRDVPILLLSDPM
GDSDKDSRYAEGSQLVPSKPSRELALEVDDLDIPWNDLVLKERIGAGSFG
TVHRAEWNGSDVAVKILMEQDLHAERFKEFLREVAIMKRLRHPNIVLFMG
AVTQPPNLSIVTEYLSRGSMYRLLHKPGLREVLDERRRLSMAYDVAKGMN
YLHKRNPPIVHRDLKSPNLLVDKKYTVKVCDFGLSRLKANTFLSSKSAAG
TPEWMAPEVLRDEPSNEKSDVYSFGVILWELATLQQPWGNLNPAQPM*
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