Tc05v2_t001710.1

Overview
NameTc05v2_t001710.1
Unique NameTc05v2_t001710.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1443
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 9 ESTs, 64 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productauxin transporter-like protein 2
NoteAuxin transporter-like protein 2
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597575
GenbankXM_007026700.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g001710Tc05v2_g001710Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p001710.1Tc05v2_p001710.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto256659auto256659Theobroma cacaoexon
exon-auto256660auto256660Theobroma cacaoexon
exon-auto256661auto256661Theobroma cacaoexon
exon-auto256662auto256662Theobroma cacaoexon
exon-auto256663auto256663Theobroma cacaoexon
exon-auto256664auto256664Theobroma cacaoexon
exon-auto256665auto256665Theobroma cacaoexon
exon-auto256666auto256666Theobroma cacaoexon
exon-auto256667auto256667Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto256668auto256668Theobroma cacaoCDS
CDS-auto256669auto256669Theobroma cacaoCDS
CDS-auto256670auto256670Theobroma cacaoCDS
CDS-auto256671auto256671Theobroma cacaoCDS
CDS-auto256672auto256672Theobroma cacaoCDS
CDS-auto256673auto256673Theobroma cacaoCDS
CDS-auto256674auto256674Theobroma cacaoCDS
CDS-auto256675auto256675Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t001710.1 ID=Tc05v2_t001710.1|Name=Tc05v2_t001710.1|organism=Theobroma cacao|type=mRNA|length=1443bp
ATGTTGCCTCCGAAGCAAGCAGAAGAAGCAATAGTCTCCAACTTCAGCGA
GACGGAGCATGAAACCAGAGAAGAAGAGAAAGAAGATGAACAACACTCAA
TGTTCAGCGTCAAGAGCTTCCTCTGGCATGGTGGCTCTGCCTGGGATGCC
TGGTTCAGCTGCGCTTCCAATCAAGTGGCGCAAGTGCTGTTGACACTGCC
CTATTCCTTCTCTCAATTGGGTATGCTGTCAGGAATTCTGCTTCAGGTAT
TCTATGGACTGCTGGGAAGTTGGACTGCATATCTCATCAGTGTGCTCTAT
ATAGAGTATAGAAGCAGGAAGGAGAAGGAGAACGTCAGCTTCAAGAACCA
TGTCATCCAGTGGTTTGAAGTGCTTGATGGTCTGCTGGGTCCGTACTGGA
AGGCAGTTGGACTTGCCTTCAACTGTACTTTCCTCTTATTCGGATCTGTC
ATACAACTTATAGCTTGTGCAAGTAATATTTACTACATCAATGACAAATT
AGACAAGAGGACATGGACCTATATTTTTGGAGCTTGCTGCGCAACCACAG
TTTTCATACCCTCCTTTCACAACTACCGTATTTGGTCTTTTCTAGGCCTT
GGGATGACCACCTATACGGCCTGGTACTTGGCCATAGCCTCCCTTGTTCA
CGGCCAGGTTGACGGCGTGACCCACTCCGGTCCAACAAAGCTAGTGCTCT
ACTTCACCGGAGCCACCAACATTCTCTACACCTTTGGCGGACATGCTGTG
ACTGTGGAAATCATGCATGCAATGTGGAAGCCTCAGAAATTCAAGTACAT
CTACTTGTTGGCCACATTATACGTTTTTACTCTAACCCTTCCATCTGCTT
CCGCCGTCTACTGGGCATTCGGGGACCAGCTCCTCAACCATTCCAATGCC
TTCTCTCTCCTCCCCAAGACCCGCTTCCGTGACGCCGCCGTCATCTTAAT
GCTTATTCACCAGTTTATCACATTTGGGTTTGCTTGTACTCCGCTGTACT
TCGTGTGGGAGAAGGTGATAGGGATGCATGACACAAGAAGCATTTGTTTG
AGGGCACTGGCAAGGCTGCCAGTGGTGATTCCAATCTGGTTCCTGGCCAT
CATCTTCCCATTCTTTGGGCCCATAAACTCTGCAGTTGGTGCTCTTTTGG
TTAGCTTCACCGTCTACATCATCCCAGCTTTAGCCCATATGCTCACCTAC
AGAAAAGCCTCTGCTCGACAGAATGCTGCAGAAAAGCCTCCATTCTTCAT
GCCAAGCTGGACTGCAATGTATGTATTCAACGCCTTCGTTGTGGTGTGGG
TTCTGGTGGTCGGGTTTGGGTTCGGTGGATGGGCTAGCATGACCAACTTC
ATCAGGCAAATTGACACCTTCGGGTTGTTTGCCAAGTGCTATCAGTGCAA
GCCTCCAACACCAGTACCAGGAGCAGCTGCACAGCACCACTGA
back to top

protein sequence of Tc05v2_p001710.1

>Tc05v2_p001710.1 ID=Tc05v2_p001710.1|Name=Tc05v2_p001710.1|organism=Theobroma cacao|type=polypeptide|length=481bp
MLPPKQAEEAIVSNFSETEHETREEEKEDEQHSMFSVKSFLWHGGSAWDA
WFSCASNQVAQVLLTLPYSFSQLGMLSGILLQVFYGLLGSWTAYLISVLY
IEYRSRKEKENVSFKNHVIQWFEVLDGLLGPYWKAVGLAFNCTFLLFGSV
IQLIACASNIYYINDKLDKRTWTYIFGACCATTVFIPSFHNYRIWSFLGL
GMTTYTAWYLAIASLVHGQVDGVTHSGPTKLVLYFTGATNILYTFGGHAV
TVEIMHAMWKPQKFKYIYLLATLYVFTLTLPSASAVYWAFGDQLLNHSNA
FSLLPKTRFRDAAVILMLIHQFITFGFACTPLYFVWEKVIGMHDTRSICL
RALARLPVVIPIWFLAIIFPFFGPINSAVGALLVSFTVYIIPALAHMLTY
RKASARQNAAEKPPFFMPSWTAMYVFNAFVVVWVLVVGFGFGGWASMTNF
IRQIDTFGLFAKCYQCKPPTPVPGAAAQHH*
back to top