Tc05v2_t000260.1

Overview
NameTc05v2_t000260.1
Unique NameTc05v2_t000260.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1128
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 12 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Productbiotin synthase
NoteBiotin synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18597417
GenbankXM_007026453.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc05v2_g000260Tc05v2_g000260Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc05v2_p000260.1Tc05v2_p000260.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto253425auto253425Theobroma cacaoexon
exon-auto253426auto253426Theobroma cacaoexon
exon-auto253427auto253427Theobroma cacaoexon
exon-auto253428auto253428Theobroma cacaoexon
exon-auto253429auto253429Theobroma cacaoexon
exon-auto253430auto253430Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto253431auto253431Theobroma cacaoCDS
CDS-auto253432auto253432Theobroma cacaoCDS
CDS-auto253433auto253433Theobroma cacaoCDS
CDS-auto253434auto253434Theobroma cacaoCDS
CDS-auto253435auto253435Theobroma cacaoCDS
CDS-auto253436auto253436Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc05v2_t000260.1 ID=Tc05v2_t000260.1|Name=Tc05v2_t000260.1|organism=Theobroma cacao|type=mRNA|length=1128bp
ATGTTGTCCATTCGATCCCCTGCGGCTCAGCTGCTGCTCAGAAGTTGTAG
TTTCTACTCTACCACTGCATCGGCTGCAGCTGTGGAAGCTGAGAGAACTA
TCCGAGAAGGCCCTAGAAACGACTGGACACGCCAGCAGATCAAGTCCATC
TACGATTCTCCTGTTCTTGATCTCCTTTTCCACGGAGCTCAAGTTCACAG
ATATGCTCATAACTTTCGAGAGGTGCAGCAGTGTACCCTCCTCTCAATCA
AGACTGGTGGATGCAGTGAGGATTGTTCATACTGTCCTCAGTCCTCAAGG
TATCATACAGGGCTAAAGGCCCAAAAGCTTATGACTAAGGAAGCTGTAAT
GCAGGCAGCTAAACAGGCAAAAGAGGCTGGTAGTACACGCTTTTGCATGG
GTGCTGCATGGAGAGACACTGTAGGAAGGAAAACTAACTTCAACCAAATT
CTTGAATATGTAAAACAAATTAGGGATATGGGAATGGAGGTGTGTTGCAC
TTTAGGCATGCTAGAGAAGCAGCAGGCTCTTGAACTCAAGAAGGCTGGCC
TTACAGCTTACAACCATAATCTTGATACCTCAAGAGAATATTACCCAAAC
ATTATTACAACCAGAACTTATGATGAGCGATTGGAAACCCTTCAACATGT
CCGTGAAGCAGGAATTAATGTCTGTTCAGGTGGAATTATAGGGCTTGGAG
AAGCAGAGGAGGACCGGGTTGGCTTGTTGCACACGCTGGCAACGCTTCCC
TCTCACCCAGAGAGTGTTCCCATTAATGCCTTGGTTGCAGTGAAAGGCAC
GCCGCTTCAAGATCAAAAGCCTGTTGAAATATGGGAGATGATACGAATGA
TTGCAACTGCTCGTATAGCCATGCCAAAATCAATGGTAAGGTTGTCAGCT
GGCAGAGTTCGATTCTCCATGCCTGAGCAGGCATTATGTTTTCTTGCCGG
AGCAAATTCCATCTTCACTGGTGAGAAGCTGTTGACAACTCCTAACAATG
ATTTTGATGCTGATCAACTTATGTTCAAAATCCTTGGGCTGATTCCAAAA
GCTCCAAGCTTTTCCGAGGAAGCAGCAAAGACTTCCGAAGCAGAAAACTG
TGAGGAAGCTCTCTCAAGTTCGGGTTGA
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protein sequence of Tc05v2_p000260.1

>Tc05v2_p000260.1 ID=Tc05v2_p000260.1|Name=Tc05v2_p000260.1|organism=Theobroma cacao|type=polypeptide|length=376bp
MLSIRSPAAQLLLRSCSFYSTTASAAAVEAERTIREGPRNDWTRQQIKSI
YDSPVLDLLFHGAQVHRYAHNFREVQQCTLLSIKTGGCSEDCSYCPQSSR
YHTGLKAQKLMTKEAVMQAAKQAKEAGSTRFCMGAAWRDTVGRKTNFNQI
LEYVKQIRDMGMEVCCTLGMLEKQQALELKKAGLTAYNHNLDTSREYYPN
IITTRTYDERLETLQHVREAGINVCSGGIIGLGEAEEDRVGLLHTLATLP
SHPESVPINALVAVKGTPLQDQKPVEIWEMIRMIATARIAMPKSMVRLSA
GRVRFSMPEQALCFLAGANSIFTGEKLLTTPNNDFDADQLMFKILGLIPK
APSFSEEAAKTSEAENCEEALSSSG*
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