Tc04v2_t017970.2

Overview
NameTc04v2_t017970.2
Unique NameTc04v2_t017970.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1053
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productribonucleoside-diphosphate reductase small chain A, transcript variant X2
NoteRibonucleoside-diphosphate reductase small chain A
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602878
GenbankXM_007034521.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g017970Tc04v2_g017970Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p017970.2Tc04v2_p017970.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto235428auto235428Theobroma cacaoexon
exon-auto235429auto235429Theobroma cacaoexon
exon-auto235430auto235430Theobroma cacaoexon
exon-auto235431auto235431Theobroma cacaoexon
exon-auto235432auto235432Theobroma cacaoexon
exon-auto235433auto235433Theobroma cacaoexon
exon-auto235434auto235434Theobroma cacaoexon
exon-auto235435auto235435Theobroma cacaoexon
exon-auto235436auto235436Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto235437auto235437Theobroma cacaoCDS
CDS-auto235438auto235438Theobroma cacaoCDS
CDS-auto235439auto235439Theobroma cacaoCDS
CDS-auto235440auto235440Theobroma cacaoCDS
CDS-auto235441auto235441Theobroma cacaoCDS
CDS-auto235442auto235442Theobroma cacaoCDS
CDS-auto235443auto235443Theobroma cacaoCDS
CDS-auto235444auto235444Theobroma cacaoCDS
CDS-auto235445auto235445Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t017970.2 ID=Tc04v2_t017970.2|Name=Tc04v2_t017970.2|organism=Theobroma cacao|type=mRNA|length=1053bp
ATGGGTTCCTTGAGAGATGAACAAGAAGGAGAAGAGGAAAACAGAGTAAT
GGAAAAAGAAGAAGAAAAGGAAGAGGAAGAGCCCATATTGAAAAAACAAA
ACCAGAGGTTTTGTATGTTTCCCATTAGGTATCAGACACTTTGGGAGATG
TACAAAAAGGCTGAGGCAAGTTTTTGGACAGCTGAGGAGGTTGATCTCTC
ACAAGATGTGCAGCACTGGGATGCCTTATCTAATTCAGAAAAACACTTCA
TAAGCCATGTGCTGGCATTTTTTGCGGCATCTGATGGCATAGTTTTGGAG
AATTTGGCTGCCAGATTCCTAAATGATGTTCAAATTCCAGAGGCCCGGGC
ATTCTATGGATTTCAAATTGCAATGGAGAATATTCATTCTGAAATGTACA
GTTTGCTTTTGGAGACATATATCAAGGATTCAAAAGAAAAGCATAGATTG
TTCAATGCTGTTGAAAGCATACCTTGTGTCAGAAAGAAGGCTAAGTGGGC
TTTGGATTGGATTCAGAGTTCCTCCTTGTTTGCAGAAAGACTTGTTGCTT
TTGCTTGCGTTGAAGGGATCTTCTTTTCTGGAAGCTTTTGTTCAATTTTC
TGGCTTAAAAAGAGGGGACTGATGCCAGGTTTGACATTCTCAAACGAGCT
TATATCTAGAGATGAGGGCCTTCACTGTGACTTTGCTTGCCTTCTGTACG
GTTTGTTGCAGAAACAACTTAAATGGCAAAAGGTCCATTGCATTGTTCAT
GAAGCAGTGGAAATTGAGACTGAGTTCGTGTGTGAGGCTCTCCCATGTGC
ACTTATAGGCATGAACTCAACACTCATGAGCCAGTACATAAAGTTTGTTG
CTGATCATCTTTTGGTTGCATTGGGGTGTCAGAGAAAGTACAATGTGGAA
AATCCATTTGATTGGATGGAATTTATATCTTTGCAAGGAAAAGCAAACTT
CTTTGAGAGGAGGGTTGGTGATTATCAGAAAGCATCTGTTATGTCTAGCC
TTCAGAATGGTGGTAATAAAAACTATGTCTTCAAACTGGATGAAGACTTC
TAA
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protein sequence of Tc04v2_p017970.2

>Tc04v2_p017970.2 ID=Tc04v2_p017970.2|Name=Tc04v2_p017970.2|organism=Theobroma cacao|type=polypeptide|length=351bp
MGSLRDEQEGEEENRVMEKEEEKEEEEPILKKQNQRFCMFPIRYQTLWEM
YKKAEASFWTAEEVDLSQDVQHWDALSNSEKHFISHVLAFFAASDGIVLE
NLAARFLNDVQIPEARAFYGFQIAMENIHSEMYSLLLETYIKDSKEKHRL
FNAVESIPCVRKKAKWALDWIQSSSLFAERLVAFACVEGIFFSGSFCSIF
WLKKRGLMPGLTFSNELISRDEGLHCDFACLLYGLLQKQLKWQKVHCIVH
EAVEIETEFVCEALPCALIGMNSTLMSQYIKFVADHLLVALGCQRKYNVE
NPFDWMEFISLQGKANFFERRVGDYQKASVMSSLQNGGNKNYVFKLDEDF
*
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