Tc04v2_t017200.3

Overview
NameTc04v2_t017200.3
Unique NameTc04v2_t017200.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length597
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 23 samples with support for all annotated introns
Productinosine triphosphate pyrophosphatase, transcript variant X2
NoteInosine triphosphate pyrophosphatase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602796
GenbankXM_018119554.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g017200Tc04v2_g017200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p017200.3Tc04v2_p017200.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto233724auto233724Theobroma cacaoexon
exon-auto233725auto233725Theobroma cacaoexon
exon-auto233726auto233726Theobroma cacaoexon
exon-auto233727auto233727Theobroma cacaoexon
exon-auto233728auto233728Theobroma cacaoexon
exon-auto233729auto233729Theobroma cacaoexon
exon-auto233730auto233730Theobroma cacaoexon
exon-auto233731auto233731Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto233732auto233732Theobroma cacaoCDS
CDS-auto233733auto233733Theobroma cacaoCDS
CDS-auto233734auto233734Theobroma cacaoCDS
CDS-auto233735auto233735Theobroma cacaoCDS
CDS-auto233736auto233736Theobroma cacaoCDS
CDS-auto233737auto233737Theobroma cacaoCDS
CDS-auto233738auto233738Theobroma cacaoCDS
CDS-auto233739auto233739Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t017200.3 ID=Tc04v2_t017200.3|Name=Tc04v2_t017200.3|organism=Theobroma cacao|type=mRNA|length=597bp
ATGGAGGCGGCGGGGAGAGCAGTGTTGGTGTCACGGCCGGTGACGTTCGT
AACTGGAAATGCCAAGAAGTTGGAGGAAGTCAAGGCCATCTTGGGCCAAT
CGATTCCCTTTCAGTCCCTCAAGCTTGACCGCGAACCGGAAGAAATATCC
AAAGAAAAGGCTCGTTTGGCTGCTGTCCAGGTGAATGGACCGGTGTTGGT
GGAAGATACATGTCTTTGTTTCAATGCTCTAAAGGGTCTTCCAGGGCCAT
ACATCAAGTGGTTTCTGCAGAAGATTGGCCATGAAGGTTTAAACAACTTG
TTGATGGCATATGAGGATAAGTCAGCTTACGCATTATGTGCATTTTCTTT
TGCCCTTGGACCTGATGTTGAACCTATTACCTTTCTAGGGGAAACTCCGG
GAAAAATAGTTCCTGCTAGGGGACCCAATGACTTTGGATGGGATCCTATT
TTTCAACCTGATGGCTATGACCAAACATATGCAGAGATGCCGAAGGAAGA
GAAGAACAAGATTTCTCACCGTTATAGGGCTCTTGCTATGGTGAAATCCC
ACTTTGCTGAAGCTGGATACAGTTTTAGTACTCCATCTAAAGAGTGA
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protein sequence of Tc04v2_p017200.3

>Tc04v2_p017200.3 ID=Tc04v2_p017200.3|Name=Tc04v2_p017200.3|organism=Theobroma cacao|type=polypeptide|length=199bp
MEAAGRAVLVSRPVTFVTGNAKKLEEVKAILGQSIPFQSLKLDREPEEIS
KEKARLAAVQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKIGHEGLNNL
LMAYEDKSAYALCAFSFALGPDVEPITFLGETPGKIVPARGPNDFGWDPI
FQPDGYDQTYAEMPKEEKNKISHRYRALAMVKSHFAEAGYSFSTPSKE*
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