Tc04v2_t017200.1

Overview
NameTc04v2_t017200.1
Unique NameTc04v2_t017200.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length534
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productinosine triphosphate pyrophosphatase, transcript variant X3
NoteInosine triphosphate pyrophosphatase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602796
GenbankXM_007034405.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g017200Tc04v2_g017200Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p017200.1Tc04v2_p017200.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto233688auto233688Theobroma cacaoexon
exon-auto233689auto233689Theobroma cacaoexon
exon-auto233690auto233690Theobroma cacaoexon
exon-auto233691auto233691Theobroma cacaoexon
exon-auto233692auto233692Theobroma cacaoexon
exon-auto233693auto233693Theobroma cacaoexon
exon-auto233694auto233694Theobroma cacaoexon
exon-auto233695auto233695Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto233696auto233696Theobroma cacaoCDS
CDS-auto233697auto233697Theobroma cacaoCDS
CDS-auto233698auto233698Theobroma cacaoCDS
CDS-auto233699auto233699Theobroma cacaoCDS
CDS-auto233700auto233700Theobroma cacaoCDS
CDS-auto233701auto233701Theobroma cacaoCDS
CDS-auto233702auto233702Theobroma cacaoCDS
CDS-auto233703auto233703Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t017200.1 ID=Tc04v2_t017200.1|Name=Tc04v2_t017200.1|organism=Theobroma cacao|type=mRNA|length=534bp
ATGGAGGCGGCGGGGAGAGCAGTGTTGGTGTCACGGCCGGTGACGTTCGT
AACTGGAAATGCCAAGAAGTTGGAGGAAGTCAAGGCCATCTTGGGCCAAT
CGATTCCCTTTCAGTCCCTCAAGCTTGACCTGCCTGAACTGCAAGGCGAA
CCGGAAGAAATATCCAAAGAAAAGGCTCGTTTGGCTGCTGTCCAGGTGAA
TGGACCGGTGTTGGTGGAAGATACATGTCTTTGTTTCAATGCTCTAAAGG
GTCTTCCAGGGCCATACATCAAGTGGTTTCTGCAGAAGATTGGCCATGAA
GGTTTAAACAACTTGTTGATGGCATATGAGGATAAGTCAGCTTACGCATT
ATGTGCATTTTCTTTTGCCCTTGGACCTGATGTTGAACCTATTACCTTTC
TAGGGGAAACTCCGGGAAAAATAGTTCCTGCTAGGGGACCCAATGACTTT
GGATGGGATCCTATTTTTCAACCTGATGGCTATGACCAAACAGATGCCGA
AGGAAGAGAAGAACAAGATTTCTCACCGTTATAG
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protein sequence of Tc04v2_p017200.1

>Tc04v2_p017200.1 ID=Tc04v2_p017200.1|Name=Tc04v2_p017200.1|organism=Theobroma cacao|type=polypeptide|length=178bp
MEAAGRAVLVSRPVTFVTGNAKKLEEVKAILGQSIPFQSLKLDLPELQGE
PEEISKEKARLAAVQVNGPVLVEDTCLCFNALKGLPGPYIKWFLQKIGHE
GLNNLLMAYEDKSAYALCAFSFALGPDVEPITFLGETPGKIVPARGPNDF
GWDPIFQPDGYDQTDAEGREEQDFSPL*
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