Tc04v2_t016040.2

Overview
NameTc04v2_t016040.2
Unique NameTc04v2_t016040.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length336
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 3 ESTs, and 94% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productuncharacterized LOC18602670, transcript variant X1
NotePutative Cytoplasmic tRNA 2-thiolation protein 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602670
GenbankXM_018118628.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g016040Tc04v2_g016040Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p016040.2Tc04v2_p016040.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto230806auto230806Theobroma cacaoexon
exon-auto230807auto230807Theobroma cacaoexon
exon-auto230808auto230808Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto230809auto230809Theobroma cacaoCDS
CDS-auto230810auto230810Theobroma cacaoCDS
CDS-auto230811auto230811Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t016040.2 ID=Tc04v2_t016040.2|Name=Tc04v2_t016040.2|organism=Theobroma cacao|type=mRNA|length=336bp
ATGGCTGCTCAGGAAGACCAAAAGGACATCAAGCTTCCCTCTGATTCGAT
TCCCGAAGGCTGGGTTCTGGATACCATGGTGCAAGATGATGGTACCGAAG
TCCAGTGCTACCTTTGTCCACCAACTGATCAACGTTTCTACACTTACGAA
GATCTGATGCGATACGTGAGGTATGCCAAACGGGCCAAGGTTTCCATCTA
TGCTGATAACTTTTGGGAGACGGTGGAGAAGGAAGATGGCTTTGGACCAA
TCAAGAGAGAAGGGCATAGCTCAAATCCTTTGGCTGGCATTAAGATAAGA
GACATCAAGGGCAAATCTGTTGTGACGTCTGACTGA
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protein sequence of Tc04v2_p016040.2

>Tc04v2_p016040.2 ID=Tc04v2_p016040.2|Name=Tc04v2_p016040.2|organism=Theobroma cacao|type=polypeptide|length=112bp
MAAQEDQKDIKLPSDSIPEGWVLDTMVQDDGTEVQCYLCPPTDQRFYTYE
DLMRYVRYAKRAKVSIYADNFWETVEKEDGFGPIKREGHSSNPLAGIKIR
DIKGKSVVTSD*
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