Tc04v2_t011740.3

Overview
NameTc04v2_t011740.3
Unique NameTc04v2_t011740.3
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length915
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 6 samples with support for all annotated introns
Productprotein TIFY 6A, transcript variant X1
NotePutative Protein TIFY 6A
Cross References
External references for this mRNA
DatabaseAccession
GeneID18602164
GenbankXM_018119206.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g011740Tc04v2_g011740Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p011740.3Tc04v2_p011740.3Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto220993auto220993Theobroma cacaoexon
exon-auto220994auto220994Theobroma cacaoexon
exon-auto220995auto220995Theobroma cacaoexon
exon-auto220996auto220996Theobroma cacaoexon
exon-auto220997auto220997Theobroma cacaoexon
exon-auto220998auto220998Theobroma cacaoexon
exon-auto220999auto220999Theobroma cacaoexon
exon-auto221000auto221000Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto221001auto221001Theobroma cacaoCDS
CDS-auto221002auto221002Theobroma cacaoCDS
CDS-auto221003auto221003Theobroma cacaoCDS
CDS-auto221004auto221004Theobroma cacaoCDS
CDS-auto221005auto221005Theobroma cacaoCDS
CDS-auto221006auto221006Theobroma cacaoCDS
CDS-auto221007auto221007Theobroma cacaoCDS
CDS-auto221008auto221008Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t011740.3 ID=Tc04v2_t011740.3|Name=Tc04v2_t011740.3|organism=Theobroma cacao|type=mRNA|length=915bp
ATGGCGTCATATGTCACATGTCCATTTTTAATTGAGAAAAGAAAGAGAAA
AGAAAAAGGAACATCTCTACTGGCTACTACAACAGCACAACTCCTCCTGA
ATTCAAAACCCCAACAAAAGGACTCTGCAATGGAGAGAGATTTTCTGGGT
TTGAAAAGGAAAGACTCATCCGGAACTCTTACAGAGATTGCCAGCAATAA
TATATTCAATGATTCGGTTGGCGGCATGCAACGGTGGTGGTCGGAAGACT
CTTCTTGGTCCCAATTTCAGCCTTTCGGAGCTACTCAAGACGATATGCCA
GACACCCTCGCTTCTCCGGTCTATGCTTTTGATTTTACTTGTAACCCTCT
TTCTACTTTGCCTAAGAGGAGCTTCAATAGTACTACACCATGGAAATTCC
CTTTTCAGGAAGAAACAATTCCGACCAGTAAGCAGTTTCTTGGAGGATTT
CCATTTGCGGAACGGTCTGCGACATCAAGTCCAACTGACCCAAGGAACAA
ATCCAAGCAAGTCGAGGCAGCTGATGATCGGTTAACCATCGTTTACGATA
ATAAAGTCCATGTCTTTGAGGATGTTTCGCCCAATAAGGCTGAGGCCATA
CTGCGTTTGGCCAGAGATGAGTACTACTCATTCTTGACGGCTGACGATGA
TCGGAATCAAGTAGTACTGCCGGAGCAAACAACGATGGACCTTCTCTGCT
GGACCAGCAATGGTAACCAACATGCACTTGACCCTCCTTCAATCATCAAT
TCCTCAGCGGAATTCGCCTCGCACACTTATTCAGCAATAACTCTGCCTCA
GGCTCGCAAAGCAACCTTGGAACATTTTCTGGAGAAGCGCAAGGACCGAT
TGACCAACGGTATGTTTTACAAGTTCATGAAGACGGTGCTTTATAGTCCC
GAGTTGCTGAGATGA
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protein sequence of Tc04v2_p011740.3

>Tc04v2_p011740.3 ID=Tc04v2_p011740.3|Name=Tc04v2_p011740.3|organism=Theobroma cacao|type=polypeptide|length=305bp
MASYVTCPFLIEKRKRKEKGTSLLATTTAQLLLNSKPQQKDSAMERDFLG
LKRKDSSGTLTEIASNNIFNDSVGGMQRWWSEDSSWSQFQPFGATQDDMP
DTLASPVYAFDFTCNPLSTLPKRSFNSTTPWKFPFQEETIPTSKQFLGGF
PFAERSATSSPTDPRNKSKQVEAADDRLTIVYDNKVHVFEDVSPNKAEAI
LRLARDEYYSFLTADDDRNQVVLPEQTTMDLLCWTSNGNQHALDPPSIIN
SSAEFASHTYSAITLPQARKATLEHFLEKRKDRLTNGMFYKFMKTVLYSP
ELLR*
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