Tc04v2_t006290.1

Overview
NameTc04v2_t006290.1
Unique NameTc04v2_t006290.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1488
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 100% coverage of the annotated genomic feature by RNAseq alignments, including 21 samples with support for all annotated introns
Productprobable E3 ubiquitin ligase complex SCF subunit sconB
NoteF-box family protein
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601458
GenbankXM_007032400.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g006290Tc04v2_g006290Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p006290.1Tc04v2_p006290.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto211399auto211399Theobroma cacaoexon
exon-auto211400auto211400Theobroma cacaoexon
exon-auto211401auto211401Theobroma cacaoexon
exon-auto211402auto211402Theobroma cacaoexon
exon-auto211403auto211403Theobroma cacaoexon
exon-auto211404auto211404Theobroma cacaoexon
exon-auto211405auto211405Theobroma cacaoexon
exon-auto211406auto211406Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto211407auto211407Theobroma cacaoCDS
CDS-auto211408auto211408Theobroma cacaoCDS
CDS-auto211409auto211409Theobroma cacaoCDS
CDS-auto211410auto211410Theobroma cacaoCDS
CDS-auto211411auto211411Theobroma cacaoCDS
CDS-auto211412auto211412Theobroma cacaoCDS
CDS-auto211413auto211413Theobroma cacaoCDS
CDS-auto211414auto211414Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t006290.1 ID=Tc04v2_t006290.1|Name=Tc04v2_t006290.1|organism=Theobroma cacao|type=mRNA|length=1488bp
ATGGCGGCGCCACCAGCTTCACCGCAGCAAGCGGCAACAAAGATCACCGA
TTTGGACGAAGACTCATTGGCTCACTGCGCCGCCTACCTTAGCCTTCAGG
ACCTCTCAAACCTCGCCATAACCTCCAAATTCCTGAAAAAAGTCGCTTAC
TCCGACTCTATCTGGCTCCACCGCTTCAGGGAGCGTTGGCCGCTGGAAAT
GCTATCCAGCTCTTCATTAGGTGTGAGGAAGGCCTATTTGGATTGTCGTA
CCGCATTGCATCAGCTTAAATTTGCTGATCCTTTTGTTCTGGACTTGTAT
ACCGAAGCAAGCCATTTCGACCATATACTTCTCGATAAGAACGATATAAT
CTTTTCTCAAGGTTCTGTGATAAAAAGGATGAAAACCGACAGCTTTTTGA
GTGGAGGCACGCTTGTCAGAATGAGTGATCATAATGCAAGAATTACATGC
ATGAGATTGTTTCCACTTCGTGAAACTTCTTTAGTTCGAAGTGAGACACA
AAGAGAAGAAAATGTTTTGGTAACCTCAAGTTACGACCACTCGATTCGTC
TATGGTGGAAGGGTGCTTGCCAACGATGTTTTAGAGGTCATAATGGTGCA
GTTTCCACATTGTCAGATAAATTATTAGGTGATGGTGGTGCCAAAGTAAT
GGCAAGTGGTGGGGAAGATGGTACTGTTCGCCTCTGGTCCCTTAGCTCTA
GTGGAAAACGTGGCCAACAAGCTTTAAAGGCTACACTTTATGGGCATCAG
AAACCTGTTACATCAATGTCAGTTGCAGGGCACAGAACATCCCTTTTGGT
GACCATGTCAAAGGACTCTAAGGTGAGAGTTTGGGATACAACTACGTCAT
CAGCTATTCGTTCTTCATGTTGTGTAGGAATGACTTCTGTTGCTGGTGCA
CCAGTGGACATGAAATGCCATGAAGCCTTGCTCTATGTTGCTGCTGGTTC
TTCTGTTGTGATAGTTGATTTGAGGACATTGCAAAGGGTCCACACTGTAG
CAATATATCAACCAAGATTATACTCCTTTGCAATTATGCCCTCAAAATCC
TTAATCTGCACTGGGGGATTTGGCAAAGCAATGCTTTGGGATATAAGGAG
AGGCCAGGAGTCGTCAAAACCAGAAGCAGTTGCCGAGTTGGATGGTCATA
TCGGTTCAGTGACACTATTACACATGGATCCATATAAAATAGTTACAGGA
GGGCTGGGGGATAGCTTTGTTAATGCTTGGGAAACTGAAACAGGTACGAA
AGCAAATTCTTTGCTTTGTAATCACCCAGAGCTTGGGAGTGCCAATATCA
GGTGTTCAGCCATGGCTGTAAATGCATGTAGCATTGTTACTGCCAGTTAT
GGTGAAAGTCAGGGACTTGTTCGTTTTCAGGATTTCTCCACTGCAACTCG
TCCTATTGTAGAATATGATAATGATCAGAATGTTTCAAAATTTTGGGGTA
CACAATCATATAATGATTCTGACGGATGTGATGAATGA
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protein sequence of Tc04v2_p006290.1

>Tc04v2_p006290.1 ID=Tc04v2_p006290.1|Name=Tc04v2_p006290.1|organism=Theobroma cacao|type=polypeptide|length=496bp
MAAPPASPQQAATKITDLDEDSLAHCAAYLSLQDLSNLAITSKFLKKVAY
SDSIWLHRFRERWPLEMLSSSSLGVRKAYLDCRTALHQLKFADPFVLDLY
TEASHFDHILLDKNDIIFSQGSVIKRMKTDSFLSGGTLVRMSDHNARITC
MRLFPLRETSLVRSETQREENVLVTSSYDHSIRLWWKGACQRCFRGHNGA
VSTLSDKLLGDGGAKVMASGGEDGTVRLWSLSSSGKRGQQALKATLYGHQ
KPVTSMSVAGHRTSLLVTMSKDSKVRVWDTTTSSAIRSSCCVGMTSVAGA
PVDMKCHEALLYVAAGSSVVIVDLRTLQRVHTVAIYQPRLYSFAIMPSKS
LICTGGFGKAMLWDIRRGQESSKPEAVAELDGHIGSVTLLHMDPYKIVTG
GLGDSFVNAWETETGTKANSLLCNHPELGSANIRCSAMAVNACSIVTASY
GESQGLVRFQDFSTATRPIVEYDNDQNVSKFWGTQSYNDSDGCDE*
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