Tc04v2_t003680.1

Overview
NameTc04v2_t003680.1
Unique NameTc04v2_t003680.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length882
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 9 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productprobable inactive shikimate kinase like 1, chloroplastic, transcript variant X1
NoteProbable inactive shikimate kinase like 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18601083
GenbankXM_007031899.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc04v2_g003680Tc04v2_g003680Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc04v2_p003680.1Tc04v2_p003680.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto206067auto206067Theobroma cacaoexon
exon-auto206068auto206068Theobroma cacaoexon
exon-auto206069auto206069Theobroma cacaoexon
exon-auto206070auto206070Theobroma cacaoexon
exon-auto206071auto206071Theobroma cacaoexon
exon-auto206072auto206072Theobroma cacaoexon
exon-auto206073auto206073Theobroma cacaoexon
exon-auto206074auto206074Theobroma cacaoexon
exon-auto206075auto206075Theobroma cacaoexon
exon-auto206076auto206076Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto206077auto206077Theobroma cacaoCDS
CDS-auto206078auto206078Theobroma cacaoCDS
CDS-auto206079auto206079Theobroma cacaoCDS
CDS-auto206080auto206080Theobroma cacaoCDS
CDS-auto206081auto206081Theobroma cacaoCDS
CDS-auto206082auto206082Theobroma cacaoCDS
CDS-auto206083auto206083Theobroma cacaoCDS
CDS-auto206084auto206084Theobroma cacaoCDS
CDS-auto206085auto206085Theobroma cacaoCDS
CDS-auto206086auto206086Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc04v2_t003680.1 ID=Tc04v2_t003680.1|Name=Tc04v2_t003680.1|organism=Theobroma cacao|type=mRNA|length=882bp
ATGGAGATGGCAACTATTCTTCACTCTTCTCTCCCTAGTCTCCCATTCCA
CAATCCTGTTTTGCACCCAAAATTCCCACACTCTTTCTCCACAAAAATCG
ACCGACGGACTTCTCTTTTCTCTCAAAGTCTCACAATTTCTCGTCCTCCC
CCTCGAAAATCTCTCTCCACCAACTGCTCTGTCTCTGATGACACAGCTTT
CACAACAAAGGTTGCTACTGTGGATCCCTCTATTGCTTTGAAGAAGAAAG
CAATGGATATATCCGCTGATCTGAGAGGAACTTCTATATTTCTTGTGGGG
ATGAACAACTCCATTAAATCCAGTTTGGGGAAACTGCTAGCAGATTTATT
ACGATATTATTACTTTGATAGTGATGCTTTGGTCTCGGAAGCTGCTGGGG
GTGAATCTGCTGCCATATCCTTAAAGGAGAGTGATGAGAAAGGATTCCGG
GGGTCTGAGACTGAAGTTCTGAAGCAGTTATCATCCATGGGTAGACTAGT
GGTGTGTGCTGGTGATGGTGCAGTTCAAAGTTCAACTAATTTGGCACTTC
TAAGGTATGGCATCTCGATATGGGTTGATGTGCCCTTGGACATGGTAGCC
AAGGGAATAATTGAAAAGAAGAGTCAACTTTTGTCATCAGAAATAGTGAA
TTCTGGATCTTATTCTGAGGTTTTGTCCCAGCTAACAGCTCTTTATGAAG
ACATGAGAAGTGGATATGCCACGGCTGATGCAACTGTTTCCATTCAAAAA
GTAGCATATCAGCTAGGTTACGAGGACATGGATGTAGTGTCAAAAGAAGA
CATTACTATGGAGGTTCTCAAGGAGATAGAGAGACTTACAAGAGTAAAAA
AGATGATGGAAGAAGCAGCTAGACCATTTTAA
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protein sequence of Tc04v2_p003680.1

>Tc04v2_p003680.1 ID=Tc04v2_p003680.1|Name=Tc04v2_p003680.1|organism=Theobroma cacao|type=polypeptide|length=294bp
MEMATILHSSLPSLPFHNPVLHPKFPHSFSTKIDRRTSLFSQSLTISRPP
PRKSLSTNCSVSDDTAFTTKVATVDPSIALKKKAMDISADLRGTSIFLVG
MNNSIKSSLGKLLADLLRYYYFDSDALVSEAAGGESAAISLKESDEKGFR
GSETEVLKQLSSMGRLVVCAGDGAVQSSTNLALLRYGISIWVDVPLDMVA
KGIIEKKSQLLSSEIVNSGSYSEVLSQLTALYEDMRSGYATADATVSIQK
VAYQLGYEDMDVVSKEDITMEVLKEIERLTRVKKMMEEAARPF*
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