Tc03v2_t023770.1

Overview
NameTc03v2_t023770.1
Unique NameTc03v2_t023770.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length951
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 2 ESTs, 46 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 24 samples with support for all annotated introns
Productbeta-carotene 3-hydroxylase 1, chloroplastic
NoteBeta-carotene 3-hydroxylase 1, chloroplastic
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606579
GenbankXM_007040271.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g023770Tc03v2_g023770Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p023770.1Tc03v2_p023770.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto191323auto191323Theobroma cacaoexon
exon-auto191324auto191324Theobroma cacaoexon
exon-auto191325auto191325Theobroma cacaoexon
exon-auto191326auto191326Theobroma cacaoexon
exon-auto191327auto191327Theobroma cacaoexon
exon-auto191328auto191328Theobroma cacaoexon
exon-auto191329auto191329Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto191330auto191330Theobroma cacaoCDS
CDS-auto191331auto191331Theobroma cacaoCDS
CDS-auto191332auto191332Theobroma cacaoCDS
CDS-auto191333auto191333Theobroma cacaoCDS
CDS-auto191334auto191334Theobroma cacaoCDS
CDS-auto191335auto191335Theobroma cacaoCDS
CDS-auto191336auto191336Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t023770.1 ID=Tc03v2_t023770.1|Name=Tc03v2_t023770.1|organism=Theobroma cacao|type=mRNA|length=951bp
ATGGCGACAGGAAGCTTGCTGGCTGCCTCAAGCACTGTAATCTACCAGTT
CGGACGTAGCACTGCTTTAACGACAAAACCCAACTCGCTTGCTGTTGGCT
TATCGGGTTTGGCTCGAGATACCATGCTGCAGAGAAAGGGTAGTCATATT
TTGAGGAAAAAGAATTGCTTGAATATTTTCATGGTGATGCAGCAGACAAG
AAATGAGAATGAAAACGAGGCTATAGAAAAGAGCGATACTGAGAAAATTT
CTGATAGCATAAAAGGTTACAATCACGTCACCCTTTCCAGGGTCGAGGAG
AGATTAGCTAGGAAGAAATTGGAGAGAACCACTTACCTACTTGCCGCTAC
GTTGTCTAGTTTAGGCATCTCTGCCATGGCCGTTATGGCTGTTTATTACA
GGTTTTCATGGCAAATGGAGGGTGGAGAAGTTCCACTGCTGGAGTTGGCT
GGTACATTTGCTCTCTCAGTTGGTGCTGCTGTGGGGATGGAATTTTGGGC
GAGATGGGCTCATCGAGCTCTATGGCATGCTTCATTGTGGCACATGCACG
AGTCTCATCACAGACCACGAGAGGGACCCTTTGAGCTCAACGACGTGTTC
GCAATAATCAATGCAGCCCCTGCCATTGCTCTGCTCCTCTACGGTTTCTT
AAACAGAGGCCTCTTCCCGGGACTCTGTTTTGGCGCCGGCTTAGGGATCA
CGGTTTTTGGTATGGCCTACATGTTCGTCCATGATGGTCTTGTCCACCGT
CGATTTCCAGTTGGGCCAATTGCTCATGTTCCTTATCTACGGAAAGTAGC
TGCAGCCCACCAACTTCATCATGCAGACAAATTTCAGGGAGTGCCATATG
GGTTATTTTTGGGACCTCAGGAATTGGAAGAAGTGGGAGGCATGGAGGAA
TTGGAGAAAGAGATCAAGAGAAGAACTAAACTGTCCAAAAATATTCCATA
A
back to top

protein sequence of Tc03v2_p023770.1

>Tc03v2_p023770.1 ID=Tc03v2_p023770.1|Name=Tc03v2_p023770.1|organism=Theobroma cacao|type=polypeptide|length=317bp
MATGSLLAASSTVIYQFGRSTALTTKPNSLAVGLSGLARDTMLQRKGSHI
LRKKNCLNIFMVMQQTRNENENEAIEKSDTEKISDSIKGYNHVTLSRVEE
RLARKKLERTTYLLAATLSSLGISAMAVMAVYYRFSWQMEGGEVPLLELA
GTFALSVGAAVGMEFWARWAHRALWHASLWHMHESHHRPREGPFELNDVF
AIINAAPAIALLLYGFLNRGLFPGLCFGAGLGITVFGMAYMFVHDGLVHR
RFPVGPIAHVPYLRKVAAAHQLHHADKFQGVPYGLFLGPQELEEVGGMEE
LEKEIKRRTKLSKNIP*
back to top