Tc03v2_t023410.2

Overview
NameTc03v2_t023410.2
Unique NameTc03v2_t023410.2
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1431
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 11 samples with support for all annotated introns
ProductGMP synthase [glutamine-hydrolyzing], transcript variant X2
NoteGMP synthase
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606529
GenbankXM_018118104.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g023410Tc03v2_g023410Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p023410.2Tc03v2_p023410.2Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto190536auto190536Theobroma cacaoexon
exon-auto190537auto190537Theobroma cacaoexon
exon-auto190538auto190538Theobroma cacaoexon
exon-auto190539auto190539Theobroma cacaoexon
exon-auto190540auto190540Theobroma cacaoexon
exon-auto190541auto190541Theobroma cacaoexon
exon-auto190542auto190542Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto190543auto190543Theobroma cacaoCDS
CDS-auto190544auto190544Theobroma cacaoCDS
CDS-auto190545auto190545Theobroma cacaoCDS
CDS-auto190546auto190546Theobroma cacaoCDS
CDS-auto190547auto190547Theobroma cacaoCDS
CDS-auto190548auto190548Theobroma cacaoCDS
CDS-auto190549auto190549Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t023410.2 ID=Tc03v2_t023410.2|Name=Tc03v2_t023410.2|organism=Theobroma cacao|type=mRNA|length=1431bp
ATGGACCCAAAAGCCGTGAAATCCGACTTAGTCCTGATCCTAGACTTCGG
TTCCCAATACACCCATCTCATCACTCGCCGTATCCGCTCCCTCTCTATCT
TCTCCCTTTGCATCTCCGGCACTTCCCCTCTGTCCTCGATCACGTCCCTC
AACCCAAAAGTCGTTATCCTTTCCGGCGGACCACACTCGGTCCATTCCGA
TGATTCTCCTTCATTTGCTGATGGGTTCGTTAAGTGGGCCCTGTCCAATG
GGGTTTTTGTTCTGGGTATTTGTTATGGGCTTCAGTTACTTGTTCAGAGA
CTTGGTGGTGAAGTTAGGGTTGGGGAAAGGCAGGAGTATGGGAGGATGGA
GATTGAGGTTGAGAAAAGTTGTGGTCTTTTTGGTGGGAAGAGAGTTGGGG
ATAGGCAGGTTGTTTGGATGAGTCATGGGGATGAGGCTGCTAGGTTGCCT
AATGGGTTTCAAGTGGTGGCTAGGAGTCAGCAGGGGGCAGTGGCTGCGGT
TGAGGATCAGGAGAATAGGTTTTATGGGTTGCAGTATCATCCTGAGGTTA
CACATTCGCCAGAAGGGATGGAGACTCTAAGGAATTTCTTGTTTGATGTT
TGTGGAATGAATGCTGATTGGAAAATGGAAGATGTAATGGATGAAGAAAT
TAAGGTGATCAACAACACGGTGGGGCCTGATGATCATGTTATCTGTGCTT
TATCTGGAGGTGTTGATTCCACAGTTGCTGCAATGCTTGTTCACAGGGCC
ATTGGAGATAGACTTCACTGTGTTTTTGTGGACAATGGTTTATTAAGGTA
TAAGGAGAGAGAACGGGTGATGGAAACCTTTGAAAGGGATCTACATCTAC
CTGTTACTTGTGTTGATGCAACTAATCAATTTCTTAGAACTGGAAGAACC
CACTCTCACACAATCAAAAGTCATCATAACGTTGGAGGTCTTCCCAAAGA
CATGAAATTAAAGCTCATTGAGCCACTTAAACTTCTATTCAAGGATGAGG
TTCGCCAACTTGGGGGGATATTGAGAGTTCCTGAGCTATTTTTAAAGCGC
CACCCATTTCCTGGGCCTGGCCTTGCAGTACGAATCTTGGGTGACGTAAC
TGAAGGCAATGCCTTAGATATTCTTCGTCAGGTTGATGAAATTTTCATTC
AGTCAATCAAGGATGCTGGCATTTATGACTCAATTTGGCAAGCCTTTGCT
GTATTTTTGCCTGTAAAATCAGTTGGAGTTCAAGGTGATCAAAGAACACA
TTCTCATGTTGTTGCTCTTCGAGCTGTTACAAGTCAAGATGGAATGACAG
CAGATTGGTACTATTTTGAACATGAGTTCCTTGATGATGTGGCTCGAAAA
ATATGCAACAATGTTCGTGGTGTGAATCGTGTGGTTCAAGACATCACATC
AAAGCCCCCATCAACAATTGAATGGGAATAA
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protein sequence of Tc03v2_p023410.2

>Tc03v2_p023410.2 ID=Tc03v2_p023410.2|Name=Tc03v2_p023410.2|organism=Theobroma cacao|type=polypeptide|length=477bp
MDPKAVKSDLVLILDFGSQYTHLITRRIRSLSIFSLCISGTSPLSSITSL
NPKVVILSGGPHSVHSDDSPSFADGFVKWALSNGVFVLGICYGLQLLVQR
LGGEVRVGERQEYGRMEIEVEKSCGLFGGKRVGDRQVVWMSHGDEAARLP
NGFQVVARSQQGAVAAVEDQENRFYGLQYHPEVTHSPEGMETLRNFLFDV
CGMNADWKMEDVMDEEIKVINNTVGPDDHVICALSGGVDSTVAAMLVHRA
IGDRLHCVFVDNGLLRYKERERVMETFERDLHLPVTCVDATNQFLRTGRT
HSHTIKSHHNVGGLPKDMKLKLIEPLKLLFKDEVRQLGGILRVPELFLKR
HPFPGPGLAVRILGDVTEGNALDILRQVDEIFIQSIKDAGIYDSIWQAFA
VFLPVKSVGVQGDQRTHSHVVALRAVTSQDGMTADWYYFEHEFLDDVARK
ICNNVRGVNRVVQDITSKPPSTIEWE*
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