Tc03v2_t022450.1

Overview
NameTc03v2_t022450.1
Unique NameTc03v2_t022450.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1023
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 7 ESTs, 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 27 samples with support for all annotated introns
Producteukaryotic translation initiation factor 2 subunit alpha
NoteEukaryotic translation initiation factor 2 subunit 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18606432
GenbankXM_007040033.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g022450Tc03v2_g022450Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p022450.1Tc03v2_p022450.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto188267auto188267Theobroma cacaoexon
exon-auto188268auto188268Theobroma cacaoexon
exon-auto188269auto188269Theobroma cacaoexon
exon-auto188270auto188270Theobroma cacaoexon
exon-auto188271auto188271Theobroma cacaoexon
exon-auto188272auto188272Theobroma cacaoexon
exon-auto188273auto188273Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto188274auto188274Theobroma cacaoCDS
CDS-auto188275auto188275Theobroma cacaoCDS
CDS-auto188276auto188276Theobroma cacaoCDS
CDS-auto188277auto188277Theobroma cacaoCDS
CDS-auto188278auto188278Theobroma cacaoCDS
CDS-auto188279auto188279Theobroma cacaoCDS
CDS-auto188280auto188280Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t022450.1 ID=Tc03v2_t022450.1|Name=Tc03v2_t022450.1|organism=Theobroma cacao|type=mRNA|length=1023bp
ATGCCGAACCTTGAATGTCGTATGTACGAAGCGAAGTACCCAGAGGTGGA
CATGGCGGTGATGATACAAGTGAAGAACATCGCCGACATGGGTGCGTATG
TTTCGCTCCTAGAATACAACAACATCGAAGGCATGATCTTGTTCTCCGAG
CTCTCCCGCCGTCGCATTCGTAGCGTCAGCAGTTTAATTAAGGTAGGCCG
GACGGAGCCCGTGATGGTCCTCCGTGTCGATAAGGAAAAGGGTTACATCG
ATTTGAGTAAGAGGAGGGTTAGCGAAGAAGACATCCAGGCTTGTGAGGAA
AGGTATAATAAGAGTAAGCTTGTTCACTCTATTATGCGACATGTCGCCGA
GACCTTGGATATCGATTTGGAGGATTTGTACATTAAAATTGGCTGGCCTT
TATACCGGAAATATGGTCATGCTTTTGAGGCTTTCAAAATTATTGTGACT
GATCCTGATTCTGTCTTGAACACCCTCACCTGTGAAGTAAAAAACCCTGG
CCCAGATGGACAGGAGGTGACTGAGGTGGTCCCTGCTGTGACTGAGGAAG
TCAAAGATGCTTTGATAAAAAATATTAGGAGAAGAATGACACCACAACCT
CTGAAGATTCGAGCTGATATTGAAATGAAATGTTTCCAGTTTGATGGTGT
TCTTCACATTAAGGAGGCCATGCGCGAAGCTGTGGCTGCCGGGAATGATG
ATTGTCCTGTTAAAATCAAGCTTGTTGCTCCTCCACTTTATGTTCTTACC
ACTCAAACTCTTGACAAGGAGCAAGGTATAGCTATTCTCAATAAAGCAAT
TGCAGCTTGCACTGAAGCAATAGAGCATCACAAGGGTAAACTTGCAGTCA
AAGAGCATCCTAGAGCAGTGAGTGAACGAGATGATAAATTGCTTGCTGAG
CACATGGCTAAGTTGCGTAATGATAATGAAGAGGTCAGTGGTGATGAAGA
TAGTGAAGAAGAGGAAGACACAGGCATGGGAGAAGTTGATGTTGAGAACG
CAAGTCATGGAATAATGGAATGA
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protein sequence of Tc03v2_p022450.1

>Tc03v2_p022450.1 ID=Tc03v2_p022450.1|Name=Tc03v2_p022450.1|organism=Theobroma cacao|type=polypeptide|length=341bp
MPNLECRMYEAKYPEVDMAVMIQVKNIADMGAYVSLLEYNNIEGMILFSE
LSRRRIRSVSSLIKVGRTEPVMVLRVDKEKGYIDLSKRRVSEEDIQACEE
RYNKSKLVHSIMRHVAETLDIDLEDLYIKIGWPLYRKYGHAFEAFKIIVT
DPDSVLNTLTCEVKNPGPDGQEVTEVVPAVTEEVKDALIKNIRRRMTPQP
LKIRADIEMKCFQFDGVLHIKEAMREAVAAGNDDCPVKIKLVAPPLYVLT
TQTLDKEQGIAILNKAIAACTEAIEHHKGKLAVKEHPRAVSERDDKLLAE
HMAKLRNDNEEVSGDEDSEEEEDTGMGEVDVENASHGIME*
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