Tc03v2_t016150.1

Overview
NameTc03v2_t016150.1
Unique NameTc03v2_t016150.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1230
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 4 ESTs, 16 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 26 samples with support for all annotated introns
Productprobable protein phosphatase 2C 51, transcript variant X1
NoteHighly ABA-induced PP2C gene 3, putative
Cross References
External references for this mRNA
DatabaseAccession
GeneID18605733
GenbankXM_007038934.2
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g016150Tc03v2_g016150Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p016150.1Tc03v2_p016150.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto174709auto174709Theobroma cacaoexon
exon-auto174710auto174710Theobroma cacaoexon
exon-auto174711auto174711Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto174712auto174712Theobroma cacaoCDS
CDS-auto174713auto174713Theobroma cacaoCDS
CDS-auto174714auto174714Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t016150.1 ID=Tc03v2_t016150.1|Name=Tc03v2_t016150.1|organism=Theobroma cacao|type=mRNA|length=1230bp
ATGCAGAAAAAAATGAAGGCGCAGAAGATACCGAAGCTTCACTCTCCATC
AACTAAAGCTCCCCGGAGAATGACATCTGATTCCGGTGAACTCAGCAAGC
TTACAGTCGTCAGAACCAAGAATGCTCGCCGGAGAAGATTGGAAATTAGA
AGATTGAAGTACACGTGTCAGACAATGATGAATATAACCATCACAGAAAG
CAGCAGCAACGGCGATAAAGACAAGAATCTTCTTCATGGATCAAAACCAA
GCAATGGTTTAACGGATATATCGCTTTCATTGTCTTCTTCTTCGTCAAAG
CAATCATCATCAGAGGAGAACGACATCGTTTTAGCTGGTTTTGGAGGGAA
AACTTGCAAGAAAAAAGATGATATTGAAAGTTTAACGTGCATGTCTCACG
GGTTACTATCAATTATCGGTAGGAGAAGAGAGATGGAAGATGCAGTGAAA
GTGGAGTTAGGTTTTATGGTCAAAGGAGGGGAAATTTTTGATTTTTATGG
AGTCTATGACGGGCACGGCGGGTCCAGAGTGGCGGAGGAGTGTGGAGAAA
GGTTGCATAACGTGCTGGTGGAGGAAATAGTAGAGGATAATGAGGAAGGA
AATGGGATTGATTGGGGAAGAACGATGGAGAGGTGTTTTGAGAAGATGGA
TGAAGAGGTGAATAGAGGGAGGGTGGGGGAGGAGATGGTGGGGTCGACGG
CGGTTGTGGCGGTGGTTGGTAACGGGAAGGTGATAGTGGCAAATTGTGGG
GACTCTAGAGCTGTTCTATCGAGGGGTGGTGTTGCTGTGGCCTTGTCTTT
TGATCATAAGCCTGACAGACCTGATGAGTTGGAGAGAGTTGAAGCCGGTG
GTGGAAGGGTCATAAACTGGAATGGATATCGTGTGCTCGGAGTGCTTGCC
ACTTCAAGATCCATAGGCGATCAATGCCTTAAACCATTTGTTATATGCAA
GCCAGAAGTAACAGTAAGAGAGCTAACCAATCGCGATGAGTTCCTCATAC
TGGCCAGTGATGGCCTGTGGGATGTGATATCTAATGAAGTCGCATGTCGA
GTAGTGAGGAGATGTCTGAACGGCCGAATAAGGAGGAAATCCCTTGAGAA
TATTGTCAACGAAAACCGTGCCGCCGAAGCGGCAGCAGTGTTGGTTGAGC
TTGCAATAGCTCGGGGTAGCAAAGACAACATTAGTGTGATAGTGGTTGAG
CTAAGAAAACCAAGTACTTTCCTCCCCTAA
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protein sequence of Tc03v2_p016150.1

>Tc03v2_p016150.1 ID=Tc03v2_p016150.1|Name=Tc03v2_p016150.1|organism=Theobroma cacao|type=polypeptide|length=410bp
MQKKMKAQKIPKLHSPSTKAPRRMTSDSGELSKLTVVRTKNARRRRLEIR
RLKYTCQTMMNITITESSSNGDKDKNLLHGSKPSNGLTDISLSLSSSSSK
QSSSEENDIVLAGFGGKTCKKKDDIESLTCMSHGLLSIIGRRREMEDAVK
VELGFMVKGGEIFDFYGVYDGHGGSRVAEECGERLHNVLVEEIVEDNEEG
NGIDWGRTMERCFEKMDEEVNRGRVGEEMVGSTAVVAVVGNGKVIVANCG
DSRAVLSRGGVAVALSFDHKPDRPDELERVEAGGGRVINWNGYRVLGVLA
TSRSIGDQCLKPFVICKPEVTVRELTNRDEFLILASDGLWDVISNEVACR
VVRRCLNGRIRRKSLENIVNENRAAEAAAVLVELAIARGSKDNISVIVVE
LRKPSTFLP*
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