Tc03v2_t010930.1

Overview
NameTc03v2_t010930.1
Unique NameTc03v2_t010930.1
TypemRNA
OrganismTheobroma cacao (cacao)
Sequence length1398
Properties
Property NameValue
Model evidenceSupporting evidence includes similarity to: 19 Proteins, and 100% coverage of the annotated genomic feature by RNAseq alignments, including 12 samples with support for all annotated introns
Productpalmitoyl-acyl carrier protein thioesterase, chloroplastic, transcript variant X1
NotePalmitoyl-acyl carrier protein thioesterase isoform 1
Cross References
External references for this mRNA
DatabaseAccession
GeneID18605136
GenbankXM_018116899.1
Relationships

This mRNA is a part of the following gene feature(s):

Feature NameUnique NameSpeciesType
Tc03v2_g010930Tc03v2_g010930Theobroma cacaogene


The following polypeptide feature(s) derives from this mRNA:

Feature NameUnique NameSpeciesType
Tc03v2_p010930.1Tc03v2_p010930.1Theobroma cacaopolypeptide


The following exon feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
exon-auto162670auto162670Theobroma cacaoexon
exon-auto162671auto162671Theobroma cacaoexon
exon-auto162672auto162672Theobroma cacaoexon
exon-auto162673auto162673Theobroma cacaoexon
exon-auto162674auto162674Theobroma cacaoexon
exon-auto162675auto162675Theobroma cacaoexon
exon-auto162676auto162676Theobroma cacaoexon


The following CDS feature(s) are a part of this mRNA:

Feature NameUnique NameSpeciesType
CDS-auto162677auto162677Theobroma cacaoCDS
CDS-auto162678auto162678Theobroma cacaoCDS
CDS-auto162679auto162679Theobroma cacaoCDS
CDS-auto162680auto162680Theobroma cacaoCDS
CDS-auto162681auto162681Theobroma cacaoCDS
CDS-auto162682auto162682Theobroma cacaoCDS
CDS-auto162683auto162683Theobroma cacaoCDS


Sequences
The following sequences are available for this feature:

mRNA sequence

>Tc03v2_t010930.1 ID=Tc03v2_t010930.1|Name=Tc03v2_t010930.1|organism=Theobroma cacao|type=mRNA|length=1398bp
ATGCACCAATGCCACTCGAATGCTCCCCTATTTGCGTGCAAGCTAACGAC
TGAGGTTTCTCGATTTCTCCCCCACCCATTGGAAGTGGTTGAGCTGCAAA
TTGCATCTGCTCCTCTAGATGCTGGAGCTAGGGAGCTAGGGACTGCCATC
TGTTTCTTTTTCCGAACTCGAAAGTTTGCTAGCTTGGCTCTTTTTTTTTG
TTCGCGGGTGAGCAAATGCGAGGCACTTACCATGGCATCAATGGCCAAAG
CAAGCAATGTAACTTCATTATTTCTAGGGGGTGTATGCAAGGAAGAGAAA
ACGAAGAATGTAGCCATGGCGAAGTTGGGTTTTTATTCTTCATGGAACTT
GATCAAACCGAAACGGAAAGGCCTTTTGCTAATTGCAAGTGCTAAAAATC
CTCATAATCTGGACATGATCAACGGGAAAAAAGTAAATGGAATTTTTGTT
GGTGAAGCTCCATATACGGGAAAGAAGAGCACTGTGTTGATAAAAGAACA
CGTCCCTTATAAACAAGCCCACGCGGCGAGTTTGGTTGGAAGGTTTGTGG
AGGATAGGCATGTCTACAGGCAGACCTTCATCATCAGGTCTTATGAAACT
GGACCGGACAAAACTGCCACCATGGAAACGGTTATGAATCTCCTTCAGGA
AACAGCTTTGAATCATGTAAGGAGCTCTGGTCTTGCTGGGAATGGCTTTG
GGGCTACCCGTGAGATGAGCCTTAGGAAACTCATATGGGTCGTCACCCGC
ATCCACGTTCAAGTGGAGAGATATAGCTGCTGGGGAGATGTTGTGGAGAT
TGATACTTGGGTTGATGCAGCAGGAAAGAATGCAATGCGTAGGGACTGGA
TAATCAGAGACTACAATACACAGGAGATCATAACAAGAGCAACAAGCACA
TGGGTGATTATGAACCACGAAACACGAAGATTAACCAAGATTCCTGAACA
AGTTAGGCAAGAAGTGATTCCATTCTACCTAAACAGGATTGCAATCGCTG
AAGAGAAGAACGATATCGGAAAGATTGATAAGCTTACTGATGAAAACGCA
GAAAGAATACGGTCTGGCTTAGCTCCAAGATGGAGCGACATGGATGCCAA
TCAGCATGTAAACAATGTTAAATACATCGGATGGATTTTGGAGAGTGTGC
CAATGGACGTCCTGGAAGAGTATCGTCTGACGAGCATGACCCTGGAGTAT
CGACGTGAATGCCGGAAATCCAATTTGCTAGAGTCCTTGACGAGTTCAAC
AGCAAATGTGACAGAAGATTCCAACAACAATTCTAATAATCGCAAGGCAG
ACTTGGAATACACACATCTGCTTCGCATGCAAGACGACGTGGCAGAGATA
GTCCGAGCTAGATCAGAATGGCAATCCAAGGACAAACACAGCTGGTGA
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protein sequence of Tc03v2_p010930.1

>Tc03v2_p010930.1 ID=Tc03v2_p010930.1|Name=Tc03v2_p010930.1|organism=Theobroma cacao|type=polypeptide|length=466bp
MHQCHSNAPLFACKLTTEVSRFLPHPLEVVELQIASAPLDAGARELGTAI
CFFFRTRKFASLALFFCSRVSKCEALTMASMAKASNVTSLFLGGVCKEEK
TKNVAMAKLGFYSSWNLIKPKRKGLLLIASAKNPHNLDMINGKKVNGIFV
GEAPYTGKKSTVLIKEHVPYKQAHAASLVGRFVEDRHVYRQTFIIRSYET
GPDKTATMETVMNLLQETALNHVRSSGLAGNGFGATREMSLRKLIWVVTR
IHVQVERYSCWGDVVEIDTWVDAAGKNAMRRDWIIRDYNTQEIITRATST
WVIMNHETRRLTKIPEQVRQEVIPFYLNRIAIAEEKNDIGKIDKLTDENA
ERIRSGLAPRWSDMDANQHVNNVKYIGWILESVPMDVLEEYRLTSMTLEY
RRECRKSNLLESLTSSTANVTEDSNNNSNNRKADLEYTHLLRMQDDVAEI
VRARSEWQSKDKHSW*
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